Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01899 ATGGAAAGGAGAGAAGGTAACAACTCAGGAGTAACAGTGATAGGAGCAGAAGCTCCATCAACTTATCATATGGCACCAAGGAGTGAAGCTCCAACCCAACATGGTGCTGTTCCTGAATCAGGAGGTGGAGCTATCGGTGTCTCACCGGTGAGTGTAGGATTGGACGGAGGAACAATTAAGAAAAAAAGAGGTAGGCCAAGGAAATATGGGCCAGACGGGTCGGTTACTGCTGTGGCGTTGTCACCGTTGCCAATCTCATCTTCAGCTCCTTTTGTTAATGAATTTTCAACGGCGAAGCAGGGGAAACCGAAGGGAATGGAGTTTAAGCAGTCGAAAAAAGTTGGAGCTGATCCTCTAGGTGACTCGGTTGGTACCAACTTTATGCCGCATATCATTACCGTCAATGCTGGTGAGGACATTACAATGAAAGTTATATCTTTTTCGCAACAAGGACCACGAGCTATATGCATCCTATCTGCTAGCGGCGTGATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGCGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCGCTATCTGGATCATTCATGCCTACTGAGAGCCAAGGAACAATAAGCCGGTCCGGTGGAATGAGTGTTTCTTTGTCAAGCCCTGATGGCCGTGTTGTAGGCGGTGGAGTTGCCGGTCTTCTTGTAGCTGCCACTCCTGTGCAGGTCGTGGTTGGAAGTTTTCTGCCAAGTAACCAACAAGACCAGAAACCGAAGAAGCCAAAATCCGATTATGCAACAGCTACCGTTACCGCACCTATTGCAGTGTCTTCGGCACCACCTTCAACCAATGGCGAAAGGGTAGATGTCATGTGTGGACACCCAATGCAAAATTCCGGAACACTAAACTCAAACTTTACTCCTCCTTCGGCCTTTCGCAGAGAAAACTGGGTTAACATGCACTCCATGCCGGACTCAATGAAGTCTGCAACCGATATTAACATATCTTTGCCTGATAATTAA 1005 0.4716 MERREGNNSGVTVIGAEAPSTYHMAPRSEAPTQHGAVPESGGGAIGVSPVSVGLDGGTIKKKRGRPRKYGPDGSVTAVALSPLPISSSAPFVNEFSTAKQGKPKGMEFKQSKKVGADPLGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTISRSGGMSVSLSSPDGRVVGGGVAGLLVAATPVQVVVGSFLPSNQQDQKPKKPKSDYATATVTAPIAVSSAPPSTNGERVDVMCGHPMQNSGTLNSNFTPPSAFRRENWVNMHSMPDSMKSATDINISLPDN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01899 334 FunFam AT-hook motif nuclear-localized protein 1-like 129 260 - -
Trre14g01899 334 MobiDBLite consensus disorder prediction 1 49 - -
Trre14g01899 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 308 IPR039605 GO:0003680
Trre14g01899 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 246 - -
Trre14g01899 334 CDD DUF296 129 242 IPR005175 -
Trre14g01899 334 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Trre14g01899 334 Gene3D - 129 264 - -
Trre14g01899 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01899 Trre-Chr14 17529580 17531443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01899 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.426 9.87e-99 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01899 - - gmx:100777213 493.426