Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01873 ATGGCTGCAAATTCTGATAATATCTTGTCCTTGTCATTGTGGCCTGCTTCAGAGGTTCATGGTGGCACTGATTCTCCCCGGATTGCAGTGTGTTCCCTTTGCCGCAAAGCCTTATCACCTGAAGATGAGATAACAGGTGATCTTTCCACCGGTGGTGTATGCGGTGATTGTAAATTTTTATTGCTTGAAGACTTTGGGAATCACACCCTTACACAAAGCTCTCGAAGGAGGCTTAGTGGAAGATTGAGACATGGTAGTTCTGAGTCAGTTGAGAACCCGGCATCTGGAGATGAAGATCAACTTGTAGATGGTGACAACCCTGCATGGTCATTGCAATATGCTAGTGCAAATACGACTCCTAGTGGGTCTAGAACCTGGAGGCATGCTCTCTCAGATACTGAGAGTGATGGTTTTGATAATTGGTGTTCTCTTTATGGTGAAAATGAATTTGGGAATTGGTCTCCTTTTTATAGTGAAAATGAATCAAGTTCGAGTTTTAGACCGTATAGGATTCCTCGCAGTGAGACTGATTCTTTTGCTTTTAGTGCTTATGGAGGTGACTCAGATATGGATAGACAGAGTTTTGTAGGCACTGGAATTTTTAATTTACCTGATGAGGGAGATGCGCTTGATAGTGACACTGACATAGATCCAATGCATGCTGGCATTGGCCATTGGAATTCGGATGATACGGAAGATGATGACGAAGAGGAGGATGAGGAGGACGATGAAGACGAGGGGGAAAGGGAACTACCTGAAGTTGACGAAGGTGAAGCCGCTACTGGAATATTTAGCCAGATAATCAGAGAAACATGGTTAGCTTTGGACGACGCTGATTTATCTCATGGAGCTAATTTTGGAGATTTCCTTGATACTAGACGCTTCGATGATCTTCTTGATCGTCTTGCCGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCATCGTTTGTGAATAATCTTCCTTGTGTAATCATTAGCAAGGAACACGAGAAGCACGATGAACTAGTTTGTGCTATCTGCAAGGATGTTTTGGCCCTTGGCACTGAAGTAAATCAACTTCCATGTTCTCACCTTTACCATTCTCATTGCATTTTGCCGTGGTTGAAGACACGTAATTCATGCCCTCTTTGTCGTTTTGAGCTTCCAACCGATGATAAGGATTACGAAGAGGGAAAACAAAACACTGATGGTAGAAATGTGATCTATGAGAGACAGCAACTAAATGTTATAGATGATAGTTTCTCTGATATTTCTGATGGAGCTGAAGCAGATGAAGAAGATGGTATCATTATTCATGATACCGCAGATTCTTCTGCAATAAGAGGTGGTAGAGGAAGATGGTTGTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTAGGAATGGTTATTGTACTGTGGTTAGGTAGGAACTCTCAAATTGAAGGGACTAGACATTCGAGTGCTCACTATTTGTCTGCGCAAAATCAGCACGGTGTTCGTGTTTATGGTTCTCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1548 0.4289 MAANSDNILSLSLWPASEVHGGTDSPRIAVCSLCRKALSPEDEITGDLSTGGVCGDCKFLLLEDFGNHTLTQSSRRRLSGRLRHGSSESVENPASGDEDQLVDGDNPAWSLQYASANTTPSGSRTWRHALSDTESDGFDNWCSLYGENEFGNWSPFYSENESSSSFRPYRIPRSETDSFAFSAYGGDSDMDRQSFVGTGIFNLPDEGDALDSDTDIDPMHAGIGHWNSDDTEDDDEEEDEEDDEDEGERELPEVDEGEAATGIFSQIIRETWLALDDADLSHGANFGDFLDTRRFDDLLDRLAENDSSRRGAPPAAASFVNNLPCVIISKEHEKHDELVCAICKDVLALGTEVNQLPCSHLYHSHCILPWLKTRNSCPLCRFELPTDDKDYEEGKQNTDGRNVIYERQQLNVIDDSFSDISDGAEADEEDGIIIHDTADSSAIRGGRGRWLFLAAAPIVSLVGMVIVLWLGRNSQIEGTRHSSAHYLSAQNQHGVRVYGSQNQRESRSRRWWCPF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01873 515 MobiDBLite consensus disorder prediction 76 105 - -
Trre14g01873 515 SUPERFAMILY RING/U-box 320 387 - -
Trre14g01873 515 SMART ring_2 340 380 IPR001841 -
Trre14g01873 515 MobiDBLite consensus disorder prediction 229 253 - -
Trre14g01873 515 Pfam Ring finger domain 340 381 IPR001841 -
Trre14g01873 515 FunFam E3 ubiquitin-protein ligase RING1-like 301 387 - -
Trre14g01873 515 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Trre14g01873 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 232 385 - -
Trre14g01873 515 MobiDBLite consensus disorder prediction 206 260 - -
Trre14g01873 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 387 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01873 Trre-Chr14 17214737 17216284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01873 29 515 C3H Transcription Factor Family AT5G01980 41.132 5.73e-100 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01873 - - psat:127127254 686.411