Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre14g01871 | ATGGAAGGGAACGGGGACATGTTCAGATCTTCTCCTGTTGCTGGAGCATCATCGGCGTCTTCTTCATCATCAAATTCGAGAAGATATGGATTCCCGTCGGCAGCCAGTATAATTCAGGCACCGTTATCGGCGTTTCTTGAATACTCTGGTATTCTTCCCTCCAGGTCGAATCAGCATCAACCTAACCCTGATTCTGTTCCCAACGATGGTGAGGTTTCGATTAGGATCATCGGTTCTACTGAGCAAGATAATCATAGGGAAGAAGAGGCTATACCGTTGGTGGTGAATGATGGGGCTGGGGCCGCTGCAATGACGTCTTCCCCTTCACATGAGGATGTTGAGCGGACGGGGAGTGGAAATGTTGATGCAGAAGCAGGTGGTGGTGGTGATGGTGGTGGTGCCAATGGGAGAGATTCTTCTTATCAGAGATATGATATTCAGCATGCTGCTAGATGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTTTTGGTTGTCTTCATTCGCCAACATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTGCGGAAACAAACGGCCTTGAAGGGAGAGAGGAAAATGCCTGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTGGTTGGTGTTTATTGGTGGTATCAAAATGATGATCTAATGTATCCGTTAGTCATGCTTCCTCCCAAGGAGATACCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGCACGCCAGGCTGCGATGGTATTGAAGTGTATATTGTTAATGTATTATAAGAATAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGAGCCTTGTTGCCAGCACCAGTTTGGTATCGTTTCTTCTTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTTACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTTCAGTGAAAGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCATTGCAGCCGGTGATCTTTGTGCGATTTGTCAAGAGAAGATGCATGCTCCAATCTTACTTCGCTGTAAACACATTTTCTGTGAAGACTGTGTATCCGAGTGGTTTGAGAGGGAAAGGACCTGTCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGCTATTCTGA | 1308 | 0.445 | MEGNGDMFRSSPVAGASSASSSSSNSRRYGFPSAASIIQAPLSAFLEYSGILPSRSNQHQPNPDSVPNDGEVSIRIIGSTEQDNHREEEAIPLVVNDGAGAAAMTSSPSHEDVERTGSGNVDAEAGGGGDGGGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMVLKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASVKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF | 435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre14g01871 | 435 | ProSitePatterns | Zinc finger RING-type signature. | 389 | 398 | IPR017907 | - | |
| Trre14g01871 | 435 | CDD | RING-HC_RNFT1-like | 372 | 412 | - | - | |
| Trre14g01871 | 435 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 349 | 422 | IPR013083 | - | |
| Trre14g01871 | 435 | MobiDBLite | consensus disorder prediction | 101 | 136 | - | - | |
| Trre14g01871 | 435 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Trre14g01871 | 435 | ProSiteProfiles | Zinc finger RING-type profile. | 374 | 412 | IPR001841 | - | |
| Trre14g01871 | 435 | SUPERFAMILY | RING/U-box | 365 | 417 | - | - | |
| Trre14g01871 | 435 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 20 | 435 | IPR044235 | GO:0061630|GO:1904294 | |
| Trre14g01871 | 435 | SMART | ring_2 | 374 | 411 | IPR001841 | - | |
| Trre14g01871 | 435 | Pfam | Zinc finger, C3HC4 type (RING finger) | 372 | 415 | - | - | |
| Trre14g01871 | 435 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre14g01871 | Trre-Chr14 | 17197653 | 17202396 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre14g01871 | 1 | 435 | C3H Transcription Factor Family | AT5G01960 | 68.919 | 0.0 | 620 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre14g01871 | - | K22379 | gmx:100818546 | 650.203 |