LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g01862	ATGGTCAAATTAAAAGCACTGCTAGACATCAAAAAGAGTTTGGTTGATCCCATGGACAAACTGAGGAACTGGAATAAGAGTGATCCATGTACCACAAACTGGACTGGAGTTTGGTGTTTTGATAAGAAGGGCGACGATGGTTACTTCCATATCCGCGAACTCTACTTGATGACTTCGAATCTCTCGGGAACTCTAGCACCTCAGCTTGGTCTTCTCTCCCATCTTGTGATAATGGATTTCATGTGGAACAATCTGACTGGCACAATACCAAAGGAGATTGGCAACATTAAATCATTGAGACTCTTACTTCTGAATGGAAATCAATTATCTGGTAGTTTACCAGACGAGCTTGGCAACCTTTCAAATATAGGTAGACTTCAACTGGATGAAAACCAATTGTCAGGTCCTATTCCAGAATCATTTGCCAACTTGATCAATGTTCGACACCTCCACATGAACAACAACTCATTCAATGGTCAAATTCCACCCAAACTTTCAATCCTATCCAATCTTATGCATTTGCTTTTGGACAACAATAACTTATCGGGATATCTTCCACCAGAATTCTCGAAGTTAGAAAGTTTGGAAATACTCCAACTTGATAACAATAATTTCAGCGGGAATGGAATTCCTTCTAGCTACGAAACTTTCCACAGACTTGTAAAACTGAGTCTAAGAAATTGCAGTCTGCAAGGACCTATTCCTAATTTGAGTTCAATACGAAACCTTACATATTTGGATCTAAGCTGGAATCAGTTCAGCGGACCTATACCATTACATAAACTTGCAGACCATATGACAACAGTTGATTTGTCTCACAACAAACTCAATGGAACAATTCCTCGAGGCGTAGTATATCCTCATCTTCAAAGATTGCAACTAGAGAACAATTTACTGACTGGATCCTTCCCTACTACCATATGGCAGAATATATCCTTCAGCAGGAAGGCGAAACTTATAATTGATATTGGTAACAACTTACTTTCTGACATTTTTGGAGATCTGAATCCCCCAGAAAATGTTACCTTAAGGCTTTTTGGAAATCCTGTTTGCAAGAATTCCAACATACAAAGAATTGGTCAATTTTGTGTTCTTGAAGGGCGTGACATAGACGAAGAATATGCAAATTCAAGCATCTGTCCCGTTCAATCTTGTCCGTTGGACAATTTCTATGAATTTGCACCCTCGTCCCCAATTCATTGTTTTTGTGCAGCACCTATAAGAATTGGATATAGGTTAAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTATAAAGCTAGTTTCGTATCGTACATAACTGATGCCTTAAACTTAAGCTTCTATCAGTTATCAATAGATTCTTATGAATGGGAAGAAGGACCTCGTCTTAGAATGTATTTAAAAATTTTCCCTTCATACAACGATTCTCACTCCAACACATTCAGCCCAGACGAGGTCCGTCGCATTAATATCATCTATTCATCATGGAAATTTCCTCACACGGATTTTTTTGGACCATATGAACTCCTGAATGTCACTCTTCTAGGACCTTATGCAAATATAATTATTAATACCGAGGGCGGTGGGAAGAGAAAAACAGGCATACTAGTTGCTATTATAATAGCAGCTGTTGCTTGTGTTTTAGCAATATCTGCAATAATCATGCTCCTATTTTTTAGAAGAAATGTGAAATACCAGCACTTGATTTCGAGGAAGCGTATGTCCTCTAATGCATATATCAAAATAGATGGTGTGAAAGCATTCACTTTGAAAGAGTTGACTCATGCTACCAACAAATTCGATATCTCAAGTAAAGTCGGTGAAGGAGGTTATGGAATTGTCTATAAGGGCATTTTATCTGATGAAACATTTGTTGCCGTTAAACGAGCAGGAGAAAATTCATTACAAGGACAAAAAGAGTTTTTGACTGAGATTGAGCTTTTATCAAGGTTACATCATCGAAATCTTGTCTCACTAACTGGCTACTGTAACGAAGACGGAGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGAATGGATTTCTGGTAAAAGTAAAAAATGCAAGGAAGGCCTAAGTTTTTTCATGAGATTACGGATTGCGATGGGTGCATCCAAAGGCATACTATATCTGCATACAGAGGCTAACCCTCCTATATACCACAGAGATATTAAAGCCAGTAACATACTTCTAGACTCTAAGTTTACAGCTAAAGTGGCTGATTTTGGATTGTCGCGACTTATACCATACTCAGATGAAGATGGTCATGTACCTAATTATATATCAACAGTTGTGAAGGGAACACCGGGTTATCTGGACCCAGAATATATGATGACTCATAAGTTAACCGATAAAAGTGATGTATACAGCCTAGGGATTGTGTTTTTGGAGCTTTTGACCGGCATGCATCCAATATCACGCGGGAAAAACATTGTCCGCGAGGTTAATCTGGCTTGTCAATCTGGCACGATAGATTCAATTATCGATAACAGAATGGGCGAATATCCACCTGAATGTTTAGACAAGTTCTTAGCTCTAGCCCTCAGTTGCTGTGAAGATCATCCAGAAGAGAGACCATCCATGATAGATGTGGTGAGGGAATTGGAAGATATTATTGCCTTGTTACCTGAAACTGAAATTAGTTTATCAGATGTTTCGTTAGATAATTCTGGTAAAATGGTTCCCTCGTCTTCAGCGTCATCATTGGCAACAACATCAGGATTCATTACGACGAGAAAGGACCAACAGCACATGTCCTCATTTGTGTCAGGAAGTGATCTTGTCAGTGATGTCATTCCGACTATTGTTCCTCGTTGA	2808	0.3896	MVKLKALLDIKKSLVDPMDKLRNWNKSDPCTTNWTGVWCFDKKGDDGYFHIRELYLMTSNLSGTLAPQLGLLSHLVIMDFMWNNLTGTIPKEIGNIKSLRLLLLNGNQLSGSLPDELGNLSNIGRLQLDENQLSGPIPESFANLINVRHLHMNNNSFNGQIPPKLSILSNLMHLLLDNNNLSGYLPPEFSKLESLEILQLDNNNFSGNGIPSSYETFHRLVKLSLRNCSLQGPIPNLSSIRNLTYLDLSWNQFSGPIPLHKLADHMTTVDLSHNKLNGTIPRGVVYPHLQRLQLENNLLTGSFPTTIWQNISFSRKAKLIIDIGNNLLSDIFGDLNPPENVTLRLFGNPVCKNSNIQRIGQFCVLEGRDIDEEYANSSICPVQSCPLDNFYEFAPSSPIHCFCAAPIRIGYRLKSPSFSYFPPYKASFVSYITDALNLSFYQLSIDSYEWEEGPRLRMYLKIFPSYNDSHSNTFSPDEVRRINIIYSSWKFPHTDFFGPYELLNVTLLGPYANIIINTEGGGKRKTGILVAIIIAAVACVLAISAIIMLLFFRRNVKYQHLISRKRMSSNAYIKIDGVKAFTLKELTHATNKFDISSKVGEGGYGIVYKGILSDETFVAVKRAGENSLQGQKEFLTEIELLSRLHHRNLVSLTGYCNEDGEQMLVYEFMPNGTLREWISGKSKKCKEGLSFFMRLRIAMGASKGILYLHTEANPPIYHRDIKASNILLDSKFTAKVADFGLSRLIPYSDEDGHVPNYISTVVKGTPGYLDPEYMMTHKLTDKSDVYSLGIVFLELLTGMHPISRGKNIVREVNLACQSGTIDSIIDNRMGEYPPECLDKFLALALSCCEDHPEERPSMIDVVRELEDIIALLPETEISLSDVSLDNSGKMVPSSSASSLATTSGFITTRKDQQHMSSFVSGSDLVSDVIPTIVPR	935

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g01862	935	SUPERFAMILY	L domain-like	17	369	-	-
	Trre14g01862	935	Gene3D	Ribonuclease Inhibitor	3	162	IPR032675	-
	Trre14g01862	935	Gene3D	Ribonuclease Inhibitor	163	260	IPR032675	-
	Trre14g01862	935	FunFam	Leucine-rich repeat protein kinase family protein	557	668	-	-
	Trre14g01862	935	Pfam	Leucine rich repeat N-terminal domain	5	39	IPR013210	-
	Trre14g01862	935	ProSitePatterns	Protein kinases ATP-binding region signature.	599	621	IPR017441	GO:0005524
	Trre14g01862	935	Gene3D	Phosphorylase Kinase; domain 1	563	668	-	-
	Trre14g01862	935	CDD	STKc_IRAK	599	868	-	-
	Trre14g01862	935	Gene3D	Transferase(Phosphotransferase) domain 1	669	878	-	-
	Trre14g01862	935	SUPERFAMILY	Protein kinase-like (PK-like)	578	884	IPR011009	-
	Trre14g01862	935	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	1	162	-	-
	Trre14g01862	935	Pfam	Protein kinase domain	595	862	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01862	935	PANTHER	RECEPTOR-LIKE PROTEIN 55	10	867	-	-
	Trre14g01862	935	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	669	881	-	-
	Trre14g01862	935	SMART	serkin_6	593	869	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01862	935	ProSiteProfiles	Protein kinase domain profile.	593	869	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01862	935	Gene3D	Ribonuclease Inhibitor	261	351	IPR032675	-
	Trre14g01862	935	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	716	728	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g01862	Trre-Chr14	17078635	17085421	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g01862	3	876	Receptor kinase-like Gene Family	AT5G01950	59.499	0.0	1035

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Trre14g01862		Pkinase	2.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g01862	-		-	gmx:100815005	1358.97