LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g01861	ATGTTGGTTCTAAGAATTTATGGATATGCTTTGGCTTTTTCATTTTGTATCATCACCCTCATGGCAGCTTCACCAAGAACACATCCTTCAGAAGTAAAAGCACTGCTAGACATCAAAAAGAGTTTGGTTGATCCCATGGACAAACTGAGGAACTGGAATAAGAGTGATCCATGTACCACAAACTGGACTGGAGTTTGGTGTTTTGATAAGAAGGGCGACGATGGTTACTTCCATATCCGCGAACTCTACTTGATGACTTCGAATCTCTCGGGAACTCTAGCACCTCAGCTTGGTCTTCTCTCCCATCTTGTGATAATGGATTTCATGTGGAACAATCTGACTGGCACAATACCAAAGGAGATTGGCAACATTAAATCATTGAGACTCTTACTTCTGAATGGAAATCAATTATCTGGTAGTTTACCAGACGAGCTTGGCAACCTTTCAAATATAGGTAGACTTCAACTGGATGAAAACCAATTGTCAGGTCCTATTCCAGAATCATTTGCCAACTTGATCAATGTTCGACACCTCCACATGAACAACAACTCATTCAATGGTCAAATTCCACCCAAACTTTCAATCCTATCCAATCTTATGCATTTGCTTTTGGACAACAATAACTTATCGGGATATCTTCCACCAGAATTCTCGAAGTTAGAAAGTTTGGAAATACTCCAACTTGATAACAATAATTTCAGCGGGAATGGAATTCCTTCTAGCTACGAAACTTTCCACAGACTTGTAAAACTGAGTCTAAGAAATTGCAGTCTGCAAGGACCTATTCCTAATTTGAGTTCAATACGAAACCTTACATATTTGGATCTAAGCTGGAATCAGTTCAGCGGACCTATACCATTACATAAACTTGCAGACCATATGACAACAGTTGATTTGTCTCACAACAAACTCAATGGAACAATTCCTCGAGGCGTAGTATATCCTCATCTTCAAAGATTGCAACTAGAGAACAATTTACTGACTGGATCCTTCCCTACTACCATATGGCAGAATATATCCTTCAGCAGGAAGGCGAAACTTATAATTGATATTGGTAACAACTTACTTTCTGACATTTTTGGAGATCTGAATCCCCCAGAAAATGTTACCTTAAGGCTTTTTGGAAATCCTGTTTGCAAGAATTCCAACATACAAAGAATTGGTCAATTTTGTGTTCTTGAAGGGCGTGACATAGACGAAGAATATGCAAATTCAAGCATCTGTCCCGTTCAATCTTGTCCGTTGGACAATTTCTATGAATTTGCACCCTCGTCCCCAATTCATTGTTTTTGTGCAGCACCTATAAGAATTGGATATAGGTTAAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTATAAAGCTAGTTTCGTATCGTACATAACTGATGCCTTAAACTTAAGCTTCTATCAGTTATCAATAGATTCTTATGAATGGGAAGAAGGACCTCGTCTTAGAATGTATTTAAAAATTTTCCCTTCATACAACGATTCTCACTCCAACACATTCAGCCCAGACGAGGTCCGTCGCATTAATATCATCTATTCATCATGGAAATTTCCTCACACGGATTTTTTTGGACCATATGAACTCCTGAATGTCACTCTTCTAGGACCTTATGCAAATATAATTATTAATACCGAGGGCGGTGGGAAGAGAAAAACAGGCATACTAGTTGCTATTATAATAGCAGCTGTTGCTTGTGTTTTAGCAATATCTGCAATAATCATGCTCCTATTTTTTAGAAGAAATGTGAAATACCAGCACTTGATTTCGAGGAAGCGTATGTCCTCTAATGCATATATCAAAATAGATGGTGTGAAAGCATTCACTTTGAAAGAGTTGACTCATGCTACCAACAAATTCGATATCTCAAGTAAAGTCGGTGAAGGAGGTTATGGAATTGTCTATAAGGGCATTTTATCTGATGAAACATTTGTTGCCGTTAAACGAGCAGGAGAAAATTCATTACAAGGACAAAAAGAGTTTTTGACTGAGATTGAGCTTTTATCAAGGTTACATCATCGAAATCTTGTCTCACTAACTGGCTACTGTAACGAAGACGGAGAGCAGATGCTGGTTTATGAATTCATGCCCAATGGCACCCTAAGGGAATGGATTTCTGGTAAAAGTAAAAAATGCAAGGAAGGCCTAAGTTTTTTCATGAGATTACGGATTGCGATGGGTGCATCCAAAGGCATACTATATCTGCATACAGAGGCTAACCCTCCTATATACCACAGAGATATTAAAGCCAGTAACATACTTCTAGACTCTAAGTTTACAGCTAAAGTGGCTGATTTTGGATTGTCGCGACTTATACCATACTCAGATGAAGATGGTCATGTACCTAATTATATATCAACAGTTGTGAAGGGAACACCGGGTTATCTGGACCCAGAATATATGATGACTCATAAGTTAACCGATAAAAGTGATGTATACAGCCTAGGGATTGTGTTTTTGGAGCTTTTGACCGGCATGCATCCAATATCACGCGGGAAAAACATTGTCCGCGAGGTTAATCTGGCTTGTCAATCTGGCACGATAGATTCAATTATCGATAACAGAATGGGCGAATATCCACCTGAATGTTTAGACAAGTTCTTAGCTCTAGCCCTCAGTTGCTGTGAAGATCATCCAGAAGAGAGACCATCCATGATAGATGTGGTGAGGGAATTGGAAGATATTATTGCCTTGTTACCTGAAACTGAAATTAGTTTATCAGATGTTTCGTTAGATAATTCTGGTAAAATGGTTCCCTCGTCTTCAGCGTCATCATTGGCAACAACATCAGGATTCATTACGACGAGAAAGGACCAACAGCACATGTCCTCATTTGTGTCAGGAAGTGATCTTGTCAGTGATGTCATTCCGACTATTGTTCCTCGTTGA	2892	0.3897	MLVLRIYGYALAFSFCIITLMAASPRTHPSEVKALLDIKKSLVDPMDKLRNWNKSDPCTTNWTGVWCFDKKGDDGYFHIRELYLMTSNLSGTLAPQLGLLSHLVIMDFMWNNLTGTIPKEIGNIKSLRLLLLNGNQLSGSLPDELGNLSNIGRLQLDENQLSGPIPESFANLINVRHLHMNNNSFNGQIPPKLSILSNLMHLLLDNNNLSGYLPPEFSKLESLEILQLDNNNFSGNGIPSSYETFHRLVKLSLRNCSLQGPIPNLSSIRNLTYLDLSWNQFSGPIPLHKLADHMTTVDLSHNKLNGTIPRGVVYPHLQRLQLENNLLTGSFPTTIWQNISFSRKAKLIIDIGNNLLSDIFGDLNPPENVTLRLFGNPVCKNSNIQRIGQFCVLEGRDIDEEYANSSICPVQSCPLDNFYEFAPSSPIHCFCAAPIRIGYRLKSPSFSYFPPYKASFVSYITDALNLSFYQLSIDSYEWEEGPRLRMYLKIFPSYNDSHSNTFSPDEVRRINIIYSSWKFPHTDFFGPYELLNVTLLGPYANIIINTEGGGKRKTGILVAIIIAAVACVLAISAIIMLLFFRRNVKYQHLISRKRMSSNAYIKIDGVKAFTLKELTHATNKFDISSKVGEGGYGIVYKGILSDETFVAVKRAGENSLQGQKEFLTEIELLSRLHHRNLVSLTGYCNEDGEQMLVYEFMPNGTLREWISGKSKKCKEGLSFFMRLRIAMGASKGILYLHTEANPPIYHRDIKASNILLDSKFTAKVADFGLSRLIPYSDEDGHVPNYISTVVKGTPGYLDPEYMMTHKLTDKSDVYSLGIVFLELLTGMHPISRGKNIVREVNLACQSGTIDSIIDNRMGEYPPECLDKFLALALSCCEDHPEERPSMIDVVRELEDIIALLPETEISLSDVSLDNSGKMVPSSSASSLATTSGFITTRKDQQHMSSFVSGSDLVSDVIPTIVPR	963

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g01861	963	FunFam	Leucine-rich repeat protein kinase family protein	585	696	-	-
	Trre14g01861	963	Gene3D	Ribonuclease Inhibitor	28	189	IPR032675	-
	Trre14g01861	963	Gene3D	Ribonuclease Inhibitor	290	379	IPR032675	-
	Trre14g01861	963	SMART	serkin_6	621	897	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01861	963	ProSiteProfiles	Protein kinase domain profile.	621	897	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01861	963	Gene3D	Phosphorylase Kinase; domain 1	591	696	-	-
	Trre14g01861	963	SUPERFAMILY	L domain-like	45	397	-	-
	Trre14g01861	963	Pfam	Leucine rich repeat N-terminal domain	29	67	IPR013210	-
	Trre14g01861	963	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	744	756	IPR008271	GO:0004672\|GO:0006468
	Trre14g01861	963	CDD	STKc_IRAK	627	896	-	-
	Trre14g01861	963	Gene3D	Transferase(Phosphotransferase) domain 1	697	906	-	-
	Trre14g01861	963	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	697	909	-	-
	Trre14g01861	963	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	29	190	-	-
	Trre14g01861	963	Gene3D	Ribonuclease Inhibitor	190	289	IPR032675	-
	Trre14g01861	963	ProSitePatterns	Protein kinases ATP-binding region signature.	627	649	IPR017441	GO:0005524
	Trre14g01861	963	Pfam	Protein kinase domain	623	890	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01861	963	PANTHER	RECEPTOR-LIKE PROTEIN 55	38	895	-	-
	Trre14g01861	963	SUPERFAMILY	Protein kinase-like (PK-like)	606	912	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g01861	Trre-Chr14	17078371	17085421	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g01861	5	904	Receptor kinase-like Gene Family	AT5G01950	59.337	0.0	1065

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Trre14g01861		Pkinase	3e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g01861	-		-	gmx:100815005	1397.88