Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01821 ATGACCTTTAATGCTCCTTTAGGAAATTCAAATTCCTTTGGTAATAGTGTTGTTGGTGAAAAGCAACAAAGTAGTAAAAAAACTTCAACTCCAAATCTATCTGAGTCAAAGACAAATGTGTCCATGGCATCTTCAGTTCATGTTGCAAGACAATCACCTATAAGACGACGAAGGAAACACATATCTCCGCGTAATTTGCCTAAGATTACTGATCAAGAATTGCAGCAATTATCTGGAGATTTAAATTCCACAATTGTGCCATTATTTGAGAAAACATTGACTGCTAGTGATGTTGGTCGACTCGGTCGAATGGTTCTTCCAAAACCATGTGTTGAAACATATTTTCCTCCTATTTCTCAACCAGGGGGCATTTATTTACACATTGAAGATATGAAAGGGAAGAAATTGATGTTTAGGTTTAGATTTTGGCCAAATAATAACAGCAGGATATATGTTTTAGAAGGTGTACAACCTTGGATTCAGTCTATGCAATTGCAAGCTGGAGATTTTGTAACATTTAGCAGGATGGACCCCGAGAAAAGACTGATAATAGGGTTTCGAAAAGCGTCAATTTCATCTACAGAGGTGCATGACATTACTATTTCTAAAAGCAAGAAAAGAGAAGAAATGCATCTACCACAAGAATTGGTTCCTAAGAAGAAAAGAAAATGTGACATTGGATCAAAAAGCAAGCAAGTTCTTAATAACCAAGATGCATTGATGCTGAAACTTACTTGGCAAGAAGCTCAACATTTTCTTCATCCATCCCCTACAGTTAATTCAAACATTGTGGTCATTGAGAATCATGTTTTTGAAGAATATGAAGAACCACCTATCATTGCAAAGAGAGGTATATTCATAAATGGAATGAATGAGCAATGGATACAATGTGATAAGTGCTCAAAATGGAGGAAGTTGGGATCTATGGATAATTTATGGAATCAAAGAATGTGTTCATGTTCTGCTCCCATGAATTGA 978 0.3589 MTFNAPLGNSNSFGNSVVGEKQQSSKKTSTPNLSESKTNVSMASSVHVARQSPIRRRRKHISPRNLPKITDQELQQLSGDLNSTIVPLFEKTLTASDVGRLGRMVLPKPCVETYFPPISQPGGIYLHIEDMKGKKLMFRFRFWPNNNSRIYVLEGVQPWIQSMQLQAGDFVTFSRMDPEKRLIIGFRKASISSTEVHDITISKSKKREEMHLPQELVPKKKRKCDIGSKSKQVLNNQDALMLKLTWQEAQHFLHPSPTVNSNIVVIENHVFEEYEEPPIIAKRGIFINGMNEQWIQCDKCSKWRKLGSMDNLWNQRMCSCSAPMN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01821 325 Gene3D - 67 193 IPR015300 -
Trre14g01821 325 SUPERFAMILY DNA-binding pseudobarrel domain 86 188 IPR015300 -
Trre14g01821 325 CDD B3_DNA 87 188 IPR003340 GO:0003677
Trre14g01821 325 ProSiteProfiles B3 DNA-binding domain profile. 89 190 IPR003340 GO:0003677
Trre14g01821 325 MobiDBLite consensus disorder prediction 1 48 - -
Trre14g01821 325 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 17 323 - -
Trre14g01821 325 MobiDBLite consensus disorder prediction 1 66 - -
Trre14g01821 325 ProSiteProfiles Zinc finger CW-type profile. 288 325 IPR011124 GO:0008270
Trre14g01821 325 SMART B3_2 89 190 IPR003340 GO:0003677
Trre14g01821 325 Pfam B3 DNA binding domain 89 189 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01821 Trre-Chr14 16729756 16732202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01821 29 323 B3 DNA Binding Superfamily AT4G32010 48.060 3.32e-97 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g01821 B3 2.2e-15 CL0405