Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01820 ATGCTTGAGTTTTTAGTGCAAGGAATTGACAACAATGATTGTATATATGTTTCACAGTTTTCAATTTTCATTGAAGAACTTGGAAGCATTTCACAATTTCATAGGGGTTCTAATGCATTATCTAAGCCAACTAAATCTGATATGAAAGTTAGAGATGTATATGAATCATTGATTAGTAGGCCAAAGTTGAGTATGACCTTTAATGCTCCTTTAGGAAATTCAAATTCCTTTGGTAATAGTGTTGTTGGTGAAAAGCAACAAAGTAGTAAAAAAACTTCAACTCCAAATCTATCTGAGTCAAAGACAAATGTGTCCATGGCATCTTCAGTTCATGTTGCAAGACAATCACCTATAAGACGACGAAGGAAACACATATCTCCGCGTAATTTGCCTAAGATTACTGATCAAGAATTGCAGCAATTATCTGGAGATTTAAATTCCACAATTGTGCCATTATTTGAGAAAACATTGACTGCTAGTGATGTTGGTCGACTCGGTCGAATGGTTCTTCCAAAACCATGTGTTGAAACATATTTTCCTCCTATTTCTCAACCAGGGGGCATTTATTTACACATTGAAGATATGAAAGGGAAGAAATTGATGTTTAGGTTTAGATTTTGGCCAAATAATAACAGCAGGATATATGTTTTAGAAGGTGTACAACCTTGGATTCAGTCTATGCAATTGCAAGCTGGAGATTTTGTAACATTTAGCAGGATGGACCCCGAGAAAAGACTGATAATAGGGTTTCGAAAAGCGTCAATTTCATCTACAGAGGTGCATGACATTACTATTTCTAAAAGCAAGAAAAGAGAAGAAATGCATCTACCACAAGAATTGGTTCCTAAGAAGAAAAGAAAATGTGACATTGGATCAAAAAGCAAGCAAGTTCTTAATAACCAAGATGCATTGATGCTGAAACTTACTTGGCAAGAAGCTCAACATTTTCTTCATCCATCCCCTACAGTTAATTCAAACATTGTGGTCATTGAGAATCATGTTTTTGAAGAATATGAAGAACCACCTATCATTGCAAAGAGAGGTATATTCATAAATGGAATGAATGAGCAATGGATACAATGTGATAAGTGCTCAAAATGGAGGAAGTTGGGATCTATGGATAATTTATGGAATCAAAGAATGTGTTCATGTTCTGCTCCCATGAATTGA 1170 0.3513 MLEFLVQGIDNNDCIYVSQFSIFIEELGSISQFHRGSNALSKPTKSDMKVRDVYESLISRPKLSMTFNAPLGNSNSFGNSVVGEKQQSSKKTSTPNLSESKTNVSMASSVHVARQSPIRRRRKHISPRNLPKITDQELQQLSGDLNSTIVPLFEKTLTASDVGRLGRMVLPKPCVETYFPPISQPGGIYLHIEDMKGKKLMFRFRFWPNNNSRIYVLEGVQPWIQSMQLQAGDFVTFSRMDPEKRLIIGFRKASISSTEVHDITISKSKKREEMHLPQELVPKKKRKCDIGSKSKQVLNNQDALMLKLTWQEAQHFLHPSPTVNSNIVVIENHVFEEYEEPPIIAKRGIFINGMNEQWIQCDKCSKWRKLGSMDNLWNQRMCSCSAPMN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01820 389 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 31 387 - -
Trre14g01820 389 MobiDBLite consensus disorder prediction 78 134 - -
Trre14g01820 389 SMART B3_2 153 254 IPR003340 GO:0003677
Trre14g01820 389 MobiDBLite consensus disorder prediction 78 112 - -
Trre14g01820 389 CDD B3_DNA 151 252 IPR003340 GO:0003677
Trre14g01820 389 ProSiteProfiles B3 DNA-binding domain profile. 153 254 IPR003340 GO:0003677
Trre14g01820 389 SUPERFAMILY DNA-binding pseudobarrel domain 150 252 IPR015300 -
Trre14g01820 389 ProSiteProfiles Zinc finger CW-type profile. 352 389 IPR011124 GO:0008270
Trre14g01820 389 Gene3D - 131 256 IPR015300 -
Trre14g01820 389 Pfam B3 DNA binding domain 153 253 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01820 Trre-Chr14 16729756 16732394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01820 93 387 B3 DNA Binding Superfamily AT4G32010 48.060 1.07e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g01820 B3 3.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01820 K09287 - tpra:123891930 590.882