Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01819 ATGACCTTTAATGCTCCTTTAGGAAATTCAAATTCCTTTGGTAATAGTGTTGTTGGTGAAAAGCAACAAAGTAGTAAAAAAACTTCAACTCCAAATCTATCTGAGTCAAAGACAAATGTGTCCATGGCATCTTCAGTTCATGTTGCAAGACAATCACCTATAAGACGACGAAGGAAACACATATCTCCGCGTAATTTGCCTAAGATTACTGATCAAGAATTGCAGCAATTATCTGGAGATTTAAATTCCACAATTGTGCCATTATTTGAGAAAACATTGACTGCTAGTGATGTTGGTCGACTCGGTCGAATGGTTCTTCCAAAACCATGTGTTGAAACATATTTTCCTCCTATTTCTCAACCAGGGGGCATTTATTTACACATTGAAGATATGAAAGGGAAGAAATTGATGTTTAGGTTTAGATTTTGGCCAAATAATAACAGCAGGATATATGTTTTAGAAGGTGTACAACCTTGGATTCAGTCTATGCAATTGCAAGCTGGAGATTTTGTAACATTTAGCAGGATGGACCCCGAGAAAAGACTGATAATAGGGTTTCGAAAAGCGTCAATTTCATCTACAGAGGTGCATGACATTACTATTTCTAAAAGCAAGAAAAGAGAAGAAATGCATCTACCACAAGAATTGGTTCCTAAGAAGAAAAGAAAATGTGACATTGGATCAAAAAGCAAGCAAGTTCTTAATAACCAAGATGCATTGATGCTGAAACTTACTTGGCAAGAAGCTCAACATTTTCTTCATCCATCCCCTACAGTTAATTCAAACATTGTGGTCATTGAGAATCATGTTTTTGAAGAATATGAAGAACCACCTATCATTGCAAAGAGAGGTATATTCATAAATGGAATGAATGAGCAATGGATACAATGTGATAAGTGCTCAAAATGGAGGAAGTTGGGATCTATGGATAATTTATGGAATCAAAGAATGTTATTTGAAACCATTAAAAAGACTTTGATCTAA 984 0.3526 MTFNAPLGNSNSFGNSVVGEKQQSSKKTSTPNLSESKTNVSMASSVHVARQSPIRRRRKHISPRNLPKITDQELQQLSGDLNSTIVPLFEKTLTASDVGRLGRMVLPKPCVETYFPPISQPGGIYLHIEDMKGKKLMFRFRFWPNNNSRIYVLEGVQPWIQSMQLQAGDFVTFSRMDPEKRLIIGFRKASISSTEVHDITISKSKKREEMHLPQELVPKKKRKCDIGSKSKQVLNNQDALMLKLTWQEAQHFLHPSPTVNSNIVVIENHVFEEYEEPPIIAKRGIFINGMNEQWIQCDKCSKWRKLGSMDNLWNQRMLFETIKKTLI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01819 327 CDD B3_DNA 87 188 IPR003340 GO:0003677
Trre14g01819 327 Gene3D - 287 316 - -
Trre14g01819 327 ProSiteProfiles B3 DNA-binding domain profile. 89 190 IPR003340 GO:0003677
Trre14g01819 327 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 17 307 - -
Trre14g01819 327 Gene3D - 67 193 IPR015300 -
Trre14g01819 327 MobiDBLite consensus disorder prediction 1 48 - -
Trre14g01819 327 MobiDBLite consensus disorder prediction 1 66 - -
Trre14g01819 327 SUPERFAMILY DNA-binding pseudobarrel domain 86 188 IPR015300 -
Trre14g01819 327 Coils Coil 323 327 - -
Trre14g01819 327 SMART B3_2 89 190 IPR003340 GO:0003677
Trre14g01819 327 Pfam B3 DNA binding domain 89 189 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01819 Trre-Chr14 16729514 16732202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01819 29 306 B3 DNA Binding Superfamily AT4G32010 49.675 2.18e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g01819 B3 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01819 K09287 - tpra:123891930 562.762