Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01817 ATGAAACGCCGTTTTCTCGACACAGAGGTGAGTATGCCACCATCATACAACAACAACAACACAAACGATTCATTCATCAACGTCGAAAATTTCGACACAAACATGGTGATTATATTAGCAGCACTCTTATGTGCATTGATTTGTGCTCTAGGATTAAACACCATAGCTCGCTGCGCGATGCGATGCAACAGAGGATTCTCCGAAGAAACACCGGAACAAGCAACAGCAAGGATGAACAAAACAGGGCTGAAAAAGTGTGAACTGAGTCAAATTCCGGTAACAGTTTACCATACCGGAGAAAATATTCCGGCGACGGAGTGTCCCATTTGTTTAGGAGAGTTTGAGAATGGAGACAGAGTTCGAATGTTGCCAAAATGTAATCACGAGTTTCATGTTATGTGTATTGACACGTGGTTGGTTTCACATTCTTCATGTCCCAATTGTCGAAATTCACTTGTTGTTGAGAAGGAATCCAATGTTGTTTGTTCTGATGAGGTTGCCGGAGATGGGTTGCCGGCGGTGGTTGTTGAAGTGGAAGCAAGTTGA 546 0.4322 MKRRFLDTEVSMPPSYNNNNTNDSFINVENFDTNMVIILAALLCALICALGLNTIARCAMRCNRGFSEETPEQATARMNKTGLKKCELSQIPVTVYHTGENIPATECPICLGEFENGDRVRMLPKCNHEFHVMCIDTWLVSHSSCPNCRNSLVVEKESNVVCSDEVAGDGLPAVVVEVEAS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01817 181 CDD RING-H2_EL5-like 106 149 - -
Trre14g01817 181 SMART FANCL_C_2 103 157 - -
Trre14g01817 181 SMART ring_2 107 148 IPR001841 -
Trre14g01817 181 SUPERFAMILY RING/U-box 87 155 - -
Trre14g01817 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Trre14g01817 181 Pfam Ring finger domain 106 149 IPR001841 -
Trre14g01817 181 PANTHER RING-H2 FINGER PROTEIN ATL78 9 166 IPR044602 GO:0016567|GO:0016740
Trre14g01817 181 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01817 Trre-Chr14 16695772 16696317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01817 1 163 C3H Transcription Factor Family AT3G10910 51.744 1.81e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01817 K19040 - gmx:100810195 235.343