LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g01807	ATGAGTTTCAGAGACAGGAACATTAAAGTGGAAGAAAAGAAATGTGAAAAATCAGTGTTGGGGACAAATGGGTCATTAACAAGTAGTACTACACAGTTTACAATTGATGAGAATCTTCTAGTTGACCCTAAATTGCTCTTTATTGGTTCCAAAATTGGTGAAGGAGCTCATGGAAAAGTTTATAAAGGAAGATATGTAGATCAAATTGTTGCAATCAAAGTTCTGCATCGTGGGAGCACCTCAGAAGAAAGAGCTTCACTTGAAAATCGTTTTGCAAGGGAAGTTAATATGATGTCTCGTGTCCACCATGACAATCTTGTGAAGTTTATTGGAGCATGTAAGGATCCTCTAATGGTGATAGTTACAGAGCTATTACCAGGGATGTCACTGCGAAAATACTTAACGAGTATCCGTCCTAAACCATTAGACCTTCATTTGGCTATAAATTTTGCCCTTGATATCGCTCGAGCCTTGGATTGGCTTCATGCTAACGGGATCATCCATAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTAAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCGGTAACCGAAATGATGACTGCAGAAACAGGAACTTACCGATGGATGGCACCAGAGTTGTACAGTACTGTAACGTTGCGACAGGGAGAGAAAAAGCACTATAACAACAAGGTCGATGTGTATAGCTTCGGAATTGTTTTGTGGGAGCTGCTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCCTTCAAGCAAGAGAGGCCGAAAATTCCCGATGATATATCACCTGATCTTGCTTTTATCATACAATCATGCTGGGTTGAAGATCCGAACTTGAGACCGAGCTTTAGTCAGATAATCCGGATGCTCAACGAGTTTCTCTTCACACTCTCACCACTATCTCCTCCCTTGCCAGAACCCGACAATGAACCTGAGGCGGCAACAACGAGTAATGGTACCATTACCGAGTTTTCTGCCCGGAACAAAGGAAAGTTTGCTTTTCTTCGCCAGTTATTTACTTCGAAAAGGCTAAAAAACTAA	1092	0.4121	MSFRDRNIKVEEKKCEKSVLGTNGSLTSSTTQFTIDENLLVDPKLLFIGSKIGEGAHGKVYKGRYVDQIVAIKVLHRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKPLDLHLAINFALDIARALDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPKIPDDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNEFLFTLSPLSPPLPEPDNEPEAATTSNGTITEFSARNKGKFAFLRQLFTSKRLKN	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g01807	363	ProSitePatterns	Protein kinases ATP-binding region signature.	52	73	IPR017441	GO:0005524
	Trre14g01807	363	CDD	STKc_MAP3K-like	52	307	-	-
	Trre14g01807	363	SMART	serkin_6	46	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01807	363	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	166	178	IPR008271	GO:0004672\|GO:0006468
	Trre14g01807	363	ProSiteProfiles	Protein kinase domain profile.	46	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre14g01807	363	Gene3D	Phosphorylase Kinase; domain 1	34	125	-	-
	Trre14g01807	363	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	46	308	-	-
	Trre14g01807	363	SUPERFAMILY	Protein kinase-like (PK-like)	43	329	IPR011009	-
	Trre14g01807	363	Gene3D	Transferase(Phosphotransferase) domain 1	128	318	-	-
	Trre14g01807	363	PRINTS	Tyrosine kinase catalytic domain signature	122	135	IPR001245	GO:0004672\|GO:0006468
	Trre14g01807	363	PRINTS	Tyrosine kinase catalytic domain signature	234	256	IPR001245	GO:0004672\|GO:0006468
	Trre14g01807	363	PRINTS	Tyrosine kinase catalytic domain signature	278	300	IPR001245	GO:0004672\|GO:0006468
	Trre14g01807	363	PRINTS	Tyrosine kinase catalytic domain signature	160	178	IPR001245	GO:0004672\|GO:0006468
	Trre14g01807	363	FunFam	Kinase suppressor of Ras 1	35	125	-	-
	Trre14g01807	363	Pfam	Protein tyrosine and serine/threonine kinase	48	307	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g01807	Trre-Chr14	16587661	16590350	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g01807	34	360	MAP Kinase Kinase Kinase	AT5G01850	76.353	0.0	520

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Trre14g01807		PK_Tyr_Ser-Thr	1.1e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g01807	-		-	cave:132162584	584.719