Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01775 ATGGCTCTCCAAAACAAGTATCAACAACTTCGAGATGTCACAAGATCTAGTGCTATGAACAAAGCCTCAATTATAGTAGACGCCTCCAAATACATACAAGATTTGAAGCAAAAAGTGGAAGGACTCAACTCTGAGTTAGGATCAATTGTTGAATCATCAACCCTTCAAATGGATGAGCAACCTAAGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCCTAATCAATGTGCTTATAGAAAAGAATAGACCTGGTATGTTGGTGAAAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGATAGTCACAAGGACGACAGTATCAATGAGCAAGTGGTGAAGCAAGCAGTGTTGCAAGCTATCAAGAACACGGACGACTAA 435 0.4115 MALQNKYQQLRDVTRSSAMNKASIIVDASKYIQDLKQKVEGLNSELGSIVESSTLQMDEQPKVSVKTLEKGFLINVLIEKNRPGMLVKILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINEQVVKQAVLQAIKNTDD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01775 144 Gene3D - 1 58 IPR036638 GO:0046983
Trre14g01775 144 Coils Coil 25 52 - -
Trre14g01775 144 CDD ACT_UUR-ACR-like 80 139 - -
Trre14g01775 144 ProSiteProfiles ACT domain profile. 74 144 IPR002912 -
Trre14g01775 144 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 140 - -
Trre14g01775 144 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 51 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01775 Trre-Chr14 16208804 16211664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01775 3 131 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46510 27.007 9.60e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01775 - - mtr:11442077 217.238