Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01768 ATGGCAGATCCTGCTAGTAATGGAGGTCTTGAGAGAGATATTGAACAAGCGCTCGTTGTTTTGAAGAAAGGAAGTCAGTTAATAAAGTATAGCCGAAAAGCGAAGCCGAAAGTTTGCCCTTTTAGACTCTCCTTGGATGAAACAACACTGATTTGGATTTCTCATAAAAGGGAAAGAACTCTAAAACTATCTTTGGTTTCGCGCATTATTCCTGGACAAAGAACTATTGTCTTTAGAAGATATTTACAACCAGAAAAGGATTATCTTTCATTTTCACTTGTTTATAATAACGGAGAACGAACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTGTGGTTTGCAGGACTTAAGGCATTAATTTCCACTGGAAGGCATAATAAGCTAACTGGAAGTGAATTATCATATGATGGTGTTGATTTTATTCCGAATAGTCGCCCTTTCGGTGCAGCATTAGAGTTTGCTACAAGCATTTCTCGTGGTAGGGTCTCGACTGATTCGAATCCTAGTGACTCTTCATTGTGTTGGTCGAACTCAGATGTGGGGATAGATCGTACAAATATGCAAGGAAGGACAAGTATTGGAGATGGTTTTCGGGTTAGTGTGTCGAGTACACCTAGCTGTTCAAGTGCAGGATCAGGACCTGATGACATAGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCCGATGTGGTTTCACCCGATGGAACTGGCAATCAATTCCCTTCTACCACAGATGTATTGGTTCCTAAGCCTTTAGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCGTCCGGTGTGCGTCACATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAATCTGGTGGAAGACTAGGTCATGGAATCGATAAAGACTTCGGTCGCCCTCAACTTGTTGAGTTTTTAGCAGTTACTAATGTCGAGATTGTTGCATGTGGAGAGAATCATACATGTGCTGTATCGATTTTGGACGAACTATTCTCATGGGGTGATGGTAAATATAATGTTGGACTTCTCGGACATGGTACCGATGTTAGCCATTGGATACCAAAGAGAATTAGCGGTCCTTTGGAAGGACTTCAAGTTATATCTATTGCGTGTGGTACATGGCATTCAGCGTTGGCAACTTCTAACGGAAAACTTTTCACTTTCGGTGATGGAACATTTGGTGTATTAGGTCATGGAAATAGAGAGAGTGTTTCATATCCAAAAGAGGTTCAATTGTTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACCGCAGCTATTGTAGAGGTTACGTTTCAATCAGGTTCAAATGTTTCATCTCGAAAGCTCTTCACTTGGGGAGATGGAGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCTACTTGTGTCTCAACACTCATCGAATATAATTTCCACCAGATCGCATGTGGACACACTATGACCATTGCTCTCACTACTTCCGGACATTTATTTACTATGGGAGGCACTGAACATGGTCAACTCGGAAATTCTTCATCTGATGGAAAAATACCTATACTAGTACAAGACACATTGGTGGGTGAATTTGTCGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCTTTAACTTCAAGGAGTGAATTATTTACTTGGGGTAAAGGTGCAAATGGAAGATTGGGACATGGAGATATAGATAATAGAAAATCTCCTACATTGGTTGAAGCCTTGAAAGAAAGGCATGTAAAAAACATTTCTTGCGGCTCAAGTTTCACGTCTTGCATATGCATTCATAAGTGGGTATCTGGAGTTGACCAATCCGCTTGCACCGGTTGTAGACAGCCGTTTGGTTTTACTAGGAAAAGGCATAATTGTTATAATTGCGGATTGGTACATTGTCATGGTTGCAGTTCAAGAAAAGTTATGAAAGCAGCATTGGCTCCAACACCAGGAAAGCCTCACCGTGTATGTGATTCTTGCTACGCTAAGCTTAAAGCTGTTGAGGCAAACGCGGCTGCAAATCTTAACAGAAAAGTTACTACTATGCAACCTCGCAGTTCTATCGATGGAAGGGATAGATTTGGCCAAGGTGAAATAACAAGGTCTACAAAAATTCTTTTTCCGCCTTTCTCAGAACCACTAAAATATCTTGAGATGAGAACTAATATGCTCGGAAATCCTTCCATGCTATCAACTTCTCAAATTCCATCACTTACACAAATGAAAGACATGTCATTTCCAAGTTCAACAACTCCTATTCAAAATGGTATGAAACTTAATATAGCTCCAACTCCACCAGCAACTCCACCTCTCAGTTCAAGATCAGTATCCCCGTATGCGAGAAGGCCAAGTCTGCCACGTTCTTCCAATCCGGGATTTTCAAGAAGTCTTATCGATAGTTTGAAGAAGACAAATGAGCTTTTGAACCAAGAAGTCTCAAAACTGCAGAATCAAAATCGAAGTTTGAAGCAAAAAAGTATCATGGAAATTCAAAACCTACAGAAAAACATTAAGGATGCCACCTCATTAGCTGAAGAAGAATCGTCTAAACATAAAGCCGTCAAAGAAAATCTCGAGTCTATCATAGTTCAGATAAAGGAAATGGCTGAGCAATTTCCACCAGAAGGTTTGGAGAGTGAAAAATTTAGAAACCTGATTATTCAAGCTGAAAAGTTTTTAGGAGGAAATTCAAAATCTGAAATATCGTCTATTGTACCATCAAATTTGGACTCTGAGCAACAAAGTGAGCCTGTTTCAAACAATGGTTCATGTGAACAGAAAGAACGAATCGAAGAAACTAATGAAGCTGCAGAAACGAATCCATCTCAAGATGCAGGAAATGTCTTTCAAGAAAGTAATGGATCATCTTCATCTAATACTGAATCAACAATGGCACCATCACAAAGCTCTGAAAATGATTCAAGATCATTGAACCCTTCAAGATCAGTGAGAGAAGGAGAAACACAAATCATTGAACAATTCGAACCGGGCGTTTATGTGACACTAATAGTAAAGCCTAATGGTAACAAAATTTTCAAACGTGTTAGATTCAGTAAAAGAAGGTTTGATGAACATCAAGCAGAAGAATGGTGGAATACAAACAAAGATAGGGTGCTTCGGAAATATAGCCCACAAGCGAAAAATCTTCAAGGTGTAGCGTCGTCATCTAGCAATACCGCACCACCTGCCGGAGAAAACATTAATCCTGAAAATGCGGCGTCAACTAGTACTAGTACTCCACAACCTACTGAAGAAAATGTTGAGGCAACACCTTCTTAA 3306 0.4005 MADPASNGGLERDIEQALVVLKKGSQLIKYSRKAKPKVCPFRLSLDETTLIWISHKRERTLKLSLVSRIIPGQRTIVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKALISTGRHNKLTGSELSYDGVDFIPNSRPFGAALEFATSISRGRVSTDSNPSDSSLCWSNSDVGIDRTNMQGRTSIGDGFRVSVSSTPSCSSAGSGPDDIESLGDVYIWGEVWADVVSPDGTGNQFPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEFLAVTNVEIVACGENHTCAVSILDELFSWGDGKYNVGLLGHGTDVSHWIPKRISGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHLFTMGGTEHGQLGNSSSDGKIPILVQDTLVGEFVEEISCGAHHVAALTSRSELFTWGKGANGRLGHGDIDNRKSPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVMKAALAPTPGKPHRVCDSCYAKLKAVEANAAANLNRKVTTMQPRSSIDGRDRFGQGEITRSTKILFPPFSEPLKYLEMRTNMLGNPSMLSTSQIPSLTQMKDMSFPSSTTPIQNGMKLNIAPTPPATPPLSSRSVSPYARRPSLPRSSNPGFSRSLIDSLKKTNELLNQEVSKLQNQNRSLKQKSIMEIQNLQKNIKDATSLAEEESSKHKAVKENLESIIVQIKEMAEQFPPEGLESEKFRNLIIQAEKFLGGNSKSEISSIVPSNLDSEQQSEPVSNNGSCEQKERIEETNEAAETNPSQDAGNVFQESNGSSSSNTESTMAPSQSSENDSRSLNPSRSVREGETQIIEQFEPGVYVTLIVKPNGNKIFKRVRFSKRRFDEHQAEEWWNTNKDRVLRKYSPQAKNLQGVASSSSNTAPPAGENINPENAASTSTSTPQPTEENVEATPS 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01768 1101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 685 IPR013083 -
Trre14g01768 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Trre14g01768 1101 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Trre14g01768 1101 Pfam Transcription factor BRX N-terminal domain 855 890 IPR027988 -
Trre14g01768 1101 Coils Coil 807 880 - -
Trre14g01768 1101 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Trre14g01768 1101 Gene3D - 11 130 IPR011993 -
Trre14g01768 1101 Gene3D - 201 447 IPR009091 -
Trre14g01768 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 751 805 - -
Trre14g01768 1101 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Trre14g01768 1101 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Trre14g01768 1101 Pfam Transcription factor regulating root and shoot growth via Pin3 997 1051 IPR013591 -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 945 994 - -
Trre14g01768 1101 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 865 - -
Trre14g01768 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Trre14g01768 1101 ProSiteProfiles BRX domain profile. 997 1052 IPR013591 -
Trre14g01768 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Trre14g01768 1101 SUPERFAMILY PH domain-like 13 123 - -
Trre14g01768 1101 CDD PH_PLC_plant-like 12 124 - -
Trre14g01768 1101 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Trre14g01768 1101 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Trre14g01768 1101 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Trre14g01768 1101 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Trre14g01768 1101 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Trre14g01768 1101 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Trre14g01768 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Trre14g01768 1101 SMART fyve_4 606 675 IPR000306 GO:0046872
Trre14g01768 1101 SUPERFAMILY FYVE/PHD zinc finger 608 677 IPR011011 -
Trre14g01768 1101 SUPERFAMILY RCC1/BLIP-II 223 609 IPR009091 -
Trre14g01768 1101 Gene3D - 448 609 IPR009091 -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 1054 1101 - -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 915 994 - -
Trre14g01768 1101 CDD FYVE_like_SF 617 670 - -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 782 805 - -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 751 767 - -
Trre14g01768 1101 FunFam PH, RCC1 and FYVE domains-containing protein 1 195 443 - -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 1056 1101 - -
Trre14g01768 1101 MobiDBLite consensus disorder prediction 915 933 - -
Trre14g01768 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Trre14g01768 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Trre14g01768 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 336 385 IPR000408 -
Trre14g01768 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Trre14g01768 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Trre14g01768 1101 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Trre14g01768 1101 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01768 Trre-Chr14 16092021 16096886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01768 994 1061 Major Intrinsic Protein MIP AT1G31880 38.235 1.31e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01768 - - gmx:100779684 1552.34