Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01738 ATGGGTGGCTGTTGCAGCCACGATGTTTCTGTTCGAGGCAGAGTTGAAAGTGAGGTTGATGATGGAGATTGTGATTATGATGATTATGAGGATATTAATGATGTCATGTATGAAAATGATGGAGCAATTGTTAGGTTAAGAGGATTTTCTAAGGTTGTGTCAATGTATACCCAACAGGGTAAGAAAGGTGTTAACCAAGATTCAATGACTGTTTGGGAGGACTATACTGGAGAACAAGGCATGATCTTTTGCGGTGTGTTCGATGGTCATGGTCCTCTAGGACACAAAGTTTCGCAATTTATCCGTGACAATCTACCCTCAAAACTATCTGAAGCAATCAAAATGGCACAAGAGAAGGCCAACAAATACTATGATGCCAATGATGCAGATACCGACACTTTCCATGATGCCTACAATGATATTAATCGCCATAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCTTTCGATGAAATGGATGATCATCTTGCTCAGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACGGCCGTAACTTTAATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCACGAAGGATAGAGATCAACTTATTTCTGTTCAACTTACCGTTGACTTGAAACCGGAAATTCCAAGTGAAGCTTCGAGAATCTTTAACTGCGAAGGTAGGGTTTTCGCTGCAGAAGAAGAACCGGATGTATACAGAATATGGATGCCTGATGATGACTGTCCTGGACTAGCTATGTCAAGAGCCTTTGGAGACTTTTGCCTAAAAGATTATGGCCTCATTGCAGCTCCAGATGTGTTTTATAGAAAAATTACCGAACAAGATGAATTCGTTGTTTTGGCAACTGACGGGATATGGGATGTGCTGACAAACGATGAAGTAGTAAACATAGTTGCTTCAGCGCCAAGAAAGTCAACAGCAGCAAAGTTGTTAGTAAAGCGCGCCGTTAGAGCCTGGAGATACAAGTATCCCGGATCAAAGATCGACGATTGTGCAGCTATATGCTTGTTTCTTGACGATCAACCTGTTCTATCACATTCTCAATCCAATAATATGAGAAGAAGTCGACATCATCGCAGCAAGCACTCAAACAGTAAGCACTCAAGCAGCAAACACTCAAGATCACATAAGAAAAATGAAGACAATGAAACTGTGGCTGGAAAAGTTGGAATTCAATTGGATGAAGAATGGACAGCACTTGGAGGGTTAGCTAGAGCCAATTCAATATCAAAACTTCCAAGACTTGCTAGAAATATGAGTAAAAGACAATCATCTAAGCACCTAAATGGAAGTTGA 1347 0.4083 MGGCCSHDVSVRGRVESEVDDGDCDYDDYEDINDVMYENDGAIVRLRGFSKVVSMYTQQGKKGVNQDSMTVWEDYTGEQGMIFCGVFDGHGPLGHKVSQFIRDNLPSKLSEAIKMAQEKANKYYDANDADTDTFHDAYNDINRHNNISLASWEGCFLKSFDEMDDHLAQEVNTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAVLCTKDRDQLISVQLTVDLKPEIPSEASRIFNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIAAPDVFYRKITEQDEFVVLATDGIWDVLTNDEVVNIVASAPRKSTAAKLLVKRAVRAWRYKYPGSKIDDCAAICLFLDDQPVLSHSQSNNMRRSRHHRSKHSNSKHSSSKHSRSHKKNEDNETVAGKVGIQLDEEWTALGGLARANSISKLPRLARNMSKRQSSKHLNGS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01738 448 MobiDBLite consensus disorder prediction 430 448 - -
Trre14g01738 448 MobiDBLite consensus disorder prediction 368 390 - -
Trre14g01738 448 ProSiteProfiles PPM-type phosphatase domain profile. 52 355 IPR001932 -
Trre14g01738 448 CDD PP2Cc 52 355 IPR001932 -
Trre14g01738 448 PANTHER PROTEIN PHOSPHATASE 51 353 IPR015655 GO:0004722|GO:0006470
Trre14g01738 448 MobiDBLite consensus disorder prediction 363 405 - -
Trre14g01738 448 Pfam Protein phosphatase 2C 83 334 IPR001932 -
Trre14g01738 448 Gene3D - 48 357 IPR036457 -
Trre14g01738 448 MobiDBLite consensus disorder prediction 425 448 - -
Trre14g01738 448 SMART PP2C_4 43 353 IPR001932 -
Trre14g01738 448 SUPERFAMILY PP2C-like 47 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01738 Trre-Chr14 15663708 15666126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01738 1 381 PP2C-type Phosphatase Gene Family AT5G01700 50.785 1.28e-133 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01738 - - mtr:11405988 732.635