Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01702 ATGCTCTCACATATAGAGAGATGTTGTGTCTATTACTCTATTCCCAAGACAAATGAAAATTTCCGTCTTCTTTATGACACAAAGGGTCGATTCGGTCTCCACTCTGTAAGGGATGATGAGGCAAAGTTTAAGCTCTGCAAGGTGCGATCTGTTCAGTTTGGGCAGAAAGGGATACCTTATCTAAACACCTATGATGGGCGCACCATCCGATATCCTGATCCTCTAATTAAGGCTAATGACACAATCAAACTTGACTTGGAACTTAACAAGATAACTGATTTCATCAAATTCGATGTCGGGAATGTTGTTATGGTGACTGGAGGAAGGAATAGAGGTCGTGTTGCAGTCATCAAGAACAGGGAAAAACAAAAAGGAACCTTCGAGACCATTCACGTCCAGGATTCCACCGGTAATGAGTTTGCAACCCGGTTGAGTAATGTCTTCACCATTGGCAAAGGTACAAAACCATGGGTGTCTCTACCCAAAGGAAAAGGTATCAAATTGACTGTCATTGAGGAGGCTAGGAAGCGGATCGCTTCGCAACAGGTTGCAGCTGCTTAA 561 0.4332 MLSHIERCCVYYSIPKTNENFRLLYDTKGRFGLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLELNKITDFIKFDVGNVVMVTGGRNRGRVAVIKNREKQKGTFETIHVQDSTGNEFATRLSNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRIASQQVAAA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01702 186 Pfam Ribosomal family S4e 17 91 IPR013845 -
Trre14g01702 186 CDD KOW_RPS4 97 151 IPR041982 -
Trre14g01702 186 FunFam 40S ribosomal protein S4 44 94 - -
Trre14g01702 186 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 11 176 IPR000876 GO:0003735|GO:0005840|GO:0006412
Trre14g01702 186 Pfam 40S ribosomal protein S4 C-terminus 134 180 IPR032277 -
Trre14g01702 186 Gene3D - 97 167 IPR014722 -
Trre14g01702 186 Gene3D - 44 94 IPR038237 -
Trre14g01702 186 Pfam KOW motif 99 132 IPR005824 -
Trre14g01702 186 Gene3D - 10 39 IPR036986 GO:0003723
Trre14g01702 186 SMART kow_9 96 123 IPR005824 -
Trre14g01702 186 FunFam 40S ribosomal protein S4 97 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01702 Trre-Chr14 15353235 15354245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01702 13 184 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 88.953 1.98e-114 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01702 K02987 - zju:107413773 325.479