LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g01688	ATGTCAATATCACCAGCATACCAAGAACATCTTCCAGCATCACCAGAATGGTTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACACTTGTTGGACTTCAAAGCATGCCAGGATTAGTAATTCTCTATGCAAGCATGGTGAAAAAAAAATGGGCAGTGAATTCAGCTTTCATGGCACTTTATGCTTTTGCAGCAGTTTTAATCTGTTGGGTTCTTGTTGCTTATAGAATGGCATTTGGTGATAAACTTTTACCCTTTTGGGGTAAAGGAGCACCAGCTTTAGGACAAAAGTTTCTTATTGGAAGAGCAAAAGTACCTGAAAGTACTCATTTTTTCAAGAATGGTGTTGTTGAAACTAAAATGGAAGAACCCTTTTTTCCTATGGCTTCACTTGTTTATTTTCAGTTTACTTTTGCTGCTATTACTATGATTTTGTTGGCTGGTTCTGTTCTTGGTAGAATGAATATTAAAGCTTGGATGGCTTTTGTTCCTCTTTGGCTTATTTTTTCTTATACTGTTGGTGCTTTTAGTCTTTGGGGTGGTGGATTTCTTTACCAATGGGGTGTTATTGATTATTCTGGTGGCTATGTTATTCATCTCTCTTCTGGAATTGCTGGTTTCACTGCTGCTTATTGGGTTGGACCAAGGATAAAGAGTGATAGGGAAAGGTTTCCACCAAACAATGTGTTACTCATGCTTGCAGGTTCTGGATTGCTATGGTTGGGTTGGTCAGGTTTCAATGGTGGAGCACCATATGCAGCAAATGTTGCAGCTTCAATGGCTGTGTTGAACACAAACATTTGTGCAGCAACTAGTCTCTTAGTGTGGACCACTCTTGATGTCATTTTCTTTGGGAAACCTTCTGTGATTGGAGCTGTTCAGGGTATGATGACTGGACTTGTTTGCATCACACCAGGAGCAGGGCTTGTGCAATCGTGGGCGGCTATAGTGATGGGAATTTCATCTGGGAGCATTCCTTGGGTCACCATGATGATCTTGCATAAGAAGTCAAGTCTCCTACAAAAGGTTGATGACACTCTTGGTGCATTTCACACACATGCTGTGGCTGGCCTATTGGGTGGCCTCCTCACCGGACTTTTGGCCGATCCAGCCCTATGTAGACTAATGTTGCCGGTAACCAATTCAAGGGGTGCATTCTATGGTGGAAATGGTGGTGTACAATTTCTAAAGCAATTAGTGGCAGCAGTGTTTGTTACTGCATGGAATATAGTCTCCACCTCAATCATTCTCCTTGTTATACAAATTTTCATACCCTTGAGAATGCCCGATGAGCAGCTCGAAATCGGAGACGATGCGGCTCACGGTGAGGAAGCTTATGCTCTTTGGGGTGATGGAGAAAAATATGATCCAACTAGACATGATACATTAAATACTGGTACCACTGGAGTATCACCTTATGTTAATGGTGCAAGAGGTGTTACTATTAATTTATGA	1461	0.4175	MSISPAYQEHLPASPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASMVKKKWAVNSAFMALYAFAAVLICWVLVAYRMAFGDKLLPFWGKGAPALGQKFLIGRAKVPESTHFFKNGVVETKMEEPFFPMASLVYFQFTFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLMLAGSGLLWLGWSGFNGGAPYAANVAASMAVLNTNICAATSLLVWTTLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGISSGSIPWVTMMILHKKSSLLQKVDDTLGAFHTHAVAGLLGGLLTGLLADPALCRLMLPVTNSRGAFYGGNGGVQFLKQLVAAVFVTAWNIVSTSIILLVIQIFIPLRMPDEQLEIGDDAAHGEEAYALWGDGEKYDPTRHDTLNTGTTGVSPYVNGARGVTINL	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g01688	486	PRINTS	Rhesus blood group protein signature	137	153	IPR002229	GO:0005886
	Trre14g01688	486	PRINTS	Rhesus blood group protein signature	263	285	IPR002229	GO:0005886
	Trre14g01688	486	PRINTS	Rhesus blood group protein signature	232	250	IPR002229	GO:0005886
	Trre14g01688	486	PRINTS	Rhesus blood group protein signature	356	372	IPR002229	GO:0005886
	Trre14g01688	486	NCBIfam	ammonium transporter	22	448	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Trre14g01688	486	FunFam	Ammonium transporter	6	451	-	-
	Trre14g01688	486	SUPERFAMILY	Ammonium transporter	17	430	-	-
	Trre14g01688	486	ProSitePatterns	Ammonium transporters signature.	193	218	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Trre14g01688	486	Gene3D	Ammonium transporter AmtB like domains	4	451	IPR029020	-
	Trre14g01688	486	PANTHER	AMMONIUM TRANSPORTER MEP2	9	458	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Trre14g01688	486	Pfam	Ammonium Transporter Family	24	448	IPR024041	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g01688	Trre-Chr14	15189047	15193793	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g01688	130	486	Inorganic Solute Cotransporters	AT2G38290	77.159	0.0	553

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g01688	K03320		-	gmx:100790119	864.759