Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01686 ATGGAATGCTACAACAACACTTTCTCTTATTCTTCAGGGTCATCTTCAAAAACAAAAGAGAAAAAGGGTGTGAAAAAAACCAAAAGATCATCAGTGAAACTTTCAACTGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGGCATAGAATCAGTGATAGGTTAAAGATTCTTCAGAGTATGGTTCCTGGTGGGAATAAATTAGATACTGTTTCTATGTTGGAAGAAGCTATTCATTATGTTAAGTTTCTTAAGACACAGATTTTGCTTCATCAAAGAATGATTAACTTTGTTGATGATTTTGATGAGTCATCATCACATATTTTGCTTCCTCAAGATAATTATTATTCTTCAAATGATAACATCATTCAGTATAACACTTCTGGTTCAGTTGAGTCTTTGCAGAATTTGCCACAGTTACCACTTGAGCAGTTCTGTTTTCAAGGTGAACAAGAAATCAAAACCATGTTTAATGCCACTATGAAATATTAA 489 0.3313 MECYNNTFSYSSGSSSKTKEKKGVKKTKRSSVKLSTDPQSVAARERRHRISDRLKILQSMVPGGNKLDTVSMLEEAIHYVKFLKTQILLHQRMINFVDDFDESSSHILLPQDNYYSSNDNIIQYNTSGSVESLQNLPQLPLEQFCFQGEQEIKTMFNATMKY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01686 162 FunFam Transcription factor LAX PANICLE 37 99 - -
Trre14g01686 162 Pfam Helix-loop-helix DNA-binding domain 44 83 IPR011598 GO:0046983
Trre14g01686 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 92 IPR036638 GO:0046983
Trre14g01686 162 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 127 IPR045843 GO:0003700|GO:0006355
Trre14g01686 162 MobiDBLite consensus disorder prediction 1 17 - -
Trre14g01686 162 CDD bHLH_AtIND_like 35 94 - -
Trre14g01686 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 83 IPR011598 GO:0046983
Trre14g01686 162 SMART finulus 40 89 IPR011598 GO:0046983
Trre14g01686 162 Gene3D - 26 93 IPR036638 GO:0046983
Trre14g01686 162 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01686 Trre-Chr14 15171465 15171953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01686 24 87 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 60.938 4.87e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g01686 HLH 3.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01686 - - gmx:113000114 149.058