Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01643 ATGGGTAACTGCTGCAGATCTCCGGCCGCCGTCGCTCGTGAAGATGTCAAATCAAGTTTCTCAAACAACGATCATGCAAAACGATTCAACAACGAAAATCACAACACAAACAAAAAAACTCCACCTCCGGTCACCGTACTCGGCGGCGGAGCCAAAGATAACATGGAAGAACGTTACCTAGTTGACCGTGAACTCGGTCGTGGTGAGTTCGGTGTAACTTATCTATGTATCGATCGTGATACTAGAGAGCTTCTTGCTTGTAAGAGTATTTCCAAAAGGAAGCTTCGTACTGCTGTTGATATTGATGATGTGAGACGTGAAGTTGCTATTATGCGTCATTTACCTAAGAGTTCGAGTATTGTTACTCTTCGTGAAGCTTGTGAAGATGATAATGCTGTTCATCTTGTTATGGAGCTTTGTGAAGGTGGTGAGCTTTTTGATCGGATTGTTGCTAGAGGTCATTATACTGAACGTGCTGCTGCGGCGGTTGCCAAGACTATTGTTGAGGTTGTTCAGCTTTGTCATAAACATGGTGTGATTCATCGTGATCTAAAGCCGGAGAATTTCTTGTTTGCTAATAAGAAGGAGAATTCGCCTCTTAAGGCTATTGATTTTGGGCTTTCTATATTCTTCAAGCCAGGTGAGAAATTCTCAGAAATTGTTGGAAGTCCATACTATATGGCTCCAGAGGTGCTCAAGCGGAACTATGGACCTGAAATAGATATATGGAGTGCAGGAGTGATACTCTATATCTTATTGTGTGGTGTTCCCCCATTTTGGGCTGAATCTGAGCAAGGAGTTGCACAGGCTATTCTTCGAGGGCTTATAGATTTCAAACGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGTCTTGTTAAGCAAATGTTAGAACCAGACCCTAAGCTTCGATTAACGGCCAAACAAGTGCTTGAGCATCCTTGGCTCCAAAATGCTAAGAAGGCTCCAAATGTTCCTCTTGGAGATGTTGTCAAGTCAAGGCTTAAGCAATTCTCAATGATGAATCGATTCAAAAGAAAAGCCCTTAGGGTCATTGCAGATTTCTTATCCAATGAAGAAGTTGAAGACATCAAAGAGTTGTTCAAGAAGATGGATACTGATAATGATGGTATTGTTTCCATTGAAGAACTAAAAGCTGGATTCCGAAACTTTGACTCTCAACTTGCTGAGTCTGAAATTCAAATGTTTATTGAAGCTGTAGATAATAATGGTAGTAAGGGAACACTAGACTATGGAGAATTTGTTGCCATTTCCCTTCATTTAAAAAGGATGGCTAATGATGAGCATCTTCACAAGGCCTTCTCCTATTTTGACAAGGATGGGAATGGATTTATTGAACCGGATGAGCTACGGACTGCCTTGATGGAAGATGGAACTGATGACTGTACAGATGTAGCAAATGATATTTTCCAAGAAGTAGACACAGACAAGGATGGACGAATCAGCTATGATGAATTTGTGTCTATGATGAAAACTGGAACGGATTGGAGAAAAGCTTCTCGGCATTACTCGCGTGGGAGATTCAATAGCTTGAGCTTAAAGTTAATGAAAGACAGTTCTTTAAACTTAGGAAATGAGTAG 1605 0.4112 MGNCCRSPAAVAREDVKSSFSNNDHAKRFNNENHNTNKKTPPPVTVLGGGAKDNMEERYLVDRELGRGEFGVTYLCIDRDTRELLACKSISKRKLRTAVDIDDVRREVAIMRHLPKSSSIVTLREACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVAKTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVKQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSNEEVEDIKELFKKMDTDNDGIVSIEELKAGFRNFDSQLAESEIQMFIEAVDNNGSKGTLDYGEFVAISLHLKRMANDEHLHKAFSYFDKDGNGFIEPDELRTALMEDGTDDCTDVANDIFQEVDTDKDGRISYDEFVSMMKTGTDWRKASRHYSRGRFNSLSLKLMKDSSLNLGNE 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01643 534 MobiDBLite consensus disorder prediction 18 34 - -
Trre14g01643 534 Gene3D Phosphorylase Kinase; domain 1 60 144 - -
Trre14g01643 534 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Trre14g01643 534 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Trre14g01643 534 FunFam Calcium-dependent protein kinase 7 326 502 - -
Trre14g01643 534 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Trre14g01643 534 CDD STKc_CAMK 58 316 - -
Trre14g01643 534 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Trre14g01643 534 SUPERFAMILY Protein kinase-like (PK-like) 36 342 IPR011009 -
Trre14g01643 534 Pfam EF-hand domain pair 436 499 IPR002048 GO:0005509
Trre14g01643 534 Pfam EF-hand domain pair 363 425 IPR002048 GO:0005509
Trre14g01643 534 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Trre14g01643 534 FunFam Calcium-dependent protein kinase 1 61 144 - -
Trre14g01643 534 SUPERFAMILY EF-hand 354 512 IPR011992 -
Trre14g01643 534 FunFam calcium-dependent protein kinase 13 145 325 - -
Trre14g01643 534 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Trre14g01643 534 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01643 534 Gene3D - 326 502 - -
Trre14g01643 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 494 - -
Trre14g01643 534 Pfam Protein kinase domain 61 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01643 534 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01643 534 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Trre14g01643 534 CDD EFh 437 499 IPR002048 GO:0005509
Trre14g01643 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Trre14g01643 534 SMART efh_1 400 429 IPR002048 GO:0005509
Trre14g01643 534 SMART efh_1 437 465 IPR002048 GO:0005509
Trre14g01643 534 SMART efh_1 364 392 IPR002048 GO:0005509
Trre14g01643 534 SMART efh_1 473 501 IPR002048 GO:0005509
Trre14g01643 534 MobiDBLite consensus disorder prediction 15 50 - -
Trre14g01643 534 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01643 Trre-Chr14 14741059 14747127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01643 1 531 EF-hand Containing Proteins AT1G74740 66.355 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre14g01643 Pkinase 9.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01643 K13412 - gmx:100783922 972.23