Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01639 ATGGCTTCTAGCCCTCGTACCGTTGAAGAGATCTTCAAAGATTACGATGCTCGTAGAACCGCCGTTGTTCGTGCTCTCACTCATGATGTTGATGAATTTTACGGACTTTGTGATCCAGATAAGGATAATTTGTGCCTCTATGGACATGGGAATGGAAGCTGGGAAGTAACTCTGCCGGCGGAGGAAGTTCCGCCGGAGCTTCCTGAGCCGGCTCTTGGAATCAATTTTGCTAGAGATGGTATGAACCGAAAGGACTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCGTGGTTGCTGTCGGTGGCGTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGATTGTTTAGTTTGATCAACGATCTTCCCACTGTTTTCGAACTTGTGACAGACAGGAAACCAATTAAGGACAACAAGCCAGCAGCGGACAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCCAGTGACGGGCAAGTCAAAAGCAACCCAAAGTTTGCTGCGGATGATGGTTATGAGGAGGAGGAAGACGAGCACAGCGAAACACTTTGCGGGAGCTGTGGCGGAAATTACAACGCGGATGAGTTTTGGATTGGCTGCGATATATGCGAGAGGTGGTACCATGGAAAATGTGTGAAGATCACTCCTGCGAAGGCCGAGAGCATAAAGCAATACAAGTGCCCTCAATGCAGCATCAGGCGGAACAGACCTTAG 720 0.4875 MASSPRTVEEIFKDYDARRTAVVRALTHDVDEFYGLCDPDKDNLCLYGHGNGSWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFELVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFAADDGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRNRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01639 239 PANTHER CPG BINDING PROTEIN 4 238 IPR045104 GO:0006355|GO:0042393
Trre14g01639 239 CDD PHD_AL_plant 185 235 IPR044104 -
Trre14g01639 239 Pfam PHD-finger 186 233 IPR019787 -
Trre14g01639 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Trre14g01639 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Trre14g01639 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Trre14g01639 239 FunFam PHD finger alfin-like protein 178 234 - -
Trre14g01639 239 SMART PHD_3 185 233 IPR001965 -
Trre14g01639 239 MobiDBLite consensus disorder prediction 138 175 - -
Trre14g01639 239 MobiDBLite consensus disorder prediction 146 164 - -
Trre14g01639 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Trre14g01639 239 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01639 Trre-Chr14 14677460 14679957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01639 2 238 Alfin-like Transcription Factor Family AT5G05610 75.527 3.43e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre14g01639 Alfin 2.2e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01639 K26274 - gmx:100782478 442.195