Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01637 ATGCCAGAATCACATTCCTCCACCGCCATTGCTTCTTCTTCCACTTCCAACGATGAAACTTCTCAATCAGACCAAAATGCTGATGTATCGGAGAACCGTCCACGTCAGTCTCGGCGCGTGACCATCACCTACGGGAGATTCAACCGGAGATTGAGTATCACTGATGACTCTTCCATTGTTAGGGATGATAAATGGTCCTGTTTGGCCGTTATTTTCAGCCTTTGGTTCTTCGTTGCGGTGACAATGATAATGGGGGTTTATGGGTCGATGAGTGTGGCTCTAGGCCCATGTTCTTCCATTGTTTTTCAACCTAACCCTGTGTTTGTGCAATATGTGAAGGTAGAAAACTTACAGGAAAATCCAGGACTCATTCTTTATGGTACATATCAATATCCGTCTCTTGACGTTGTTTCCACTTGGAGACAAACTTATAATATATCTATTCCTTATGGCTCAGAAAAGGAATGGAAATATTATCTGAATAGAGGGTCTGAAGTGAATATTTCATATAGCTTGAGCTCTGAGAACTCCTCTATTTATCTTGCAATTGCAGAAGGAGCTGAAAGCCTCTCAGTGTGGCTTGCTGACCCAACATATCCAAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACGCAGGAAATATTCAGGTCATCTAGCTATTATGTGGCATTGGGTAATTTGGAGCAAGAGGAGGTGGAGGTGGAATTAAACCTCACTGTAAAGGCCTTCTTGCATAATACAACAAATGCTTACTACAAATGTGCCCTGACTAGTAGTAGTCCATGTAGTCTGAATATCTTCTTTCCTGATGGAAACGCAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGAAGAGTGGTATGTCAAACTGTCGTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGGATTGACTGTGATTATGTTTTGGGCCTTCAACTTCTTGAACAAGCTTCAGAGTGCCCATGATGATCGAGTAGGATCTAGATCTGAAGGAACGGGTCCTGATCAAGCCCCTTTGCTTTCTCGCAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTACCACAGGATGAGGAGGATCTTGATTTTCTCGTTGGAGGTTCTACTGATGGGAAATGTTTAGGTGATGGTGAAACCAGTAATAATACTCGGCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGAATGTGGAACTAGGATAGCTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACTGTATGA 1362 0.4273 MPESHSSTAIASSSTSNDETSQSDQNADVSENRPRQSRRVTITYGRFNRRLSITDDSSIVRDDKWSCLAVIFSLWFFVAVTMIMGVYGSMSVALGPCSSIVFQPNPVFVQYVKVENLQENPGLILYGTYQYPSLDVVSTWRQTYNISIPYGSEKEWKYYLNRGSEVNISYSLSSENSSIYLAIAEGAESLSVWLADPTYPNTTLSWNMIHGTGMITQEIFRSSSYYVALGNLEQEEVEVELNLTVKAFLHNTTNAYYKCALTSSSPCSLNIFFPDGNAAVLVSPAPQQNTSNEEWYVKLSYGPRWLTYIFGIGGLTVIMFWAFNFLNKLQSAHDDRVGSRSEGTGPDQAPLLSRKDDDLSSWGSSYDSLPQDEEDLDFLVGGSTDGKCLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01637 453 MobiDBLite consensus disorder prediction 336 370 - -
Trre14g01637 453 ProSiteProfiles Zinc finger RING-type profile. 402 441 IPR001841 -
Trre14g01637 453 SUPERFAMILY RING/U-box 401 447 - -
Trre14g01637 453 SMART ring_2 402 440 IPR001841 -
Trre14g01637 453 Pfam Domain of unknown function (DUF4793) 214 321 IPR032010 -
Trre14g01637 453 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 453 IPR013083 -
Trre14g01637 453 Pfam Zinc finger, C3HC4 type (RING finger) 399 447 - -
Trre14g01637 453 Pfam Domain of unknown function (DUF4792) 122 190 IPR032008 -
Trre14g01637 453 PANTHER OS05G0521000 PROTEIN 52 453 - -
Trre14g01637 453 MobiDBLite consensus disorder prediction 1 35 - -
Trre14g01637 453 FunFam E3 ubiquitin-protein ligase APD2 391 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01637 Trre-Chr14 14668053 14673517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01637 375 450 C3H Transcription Factor Family AT3G06140 30.263 4.06e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01637 - - tpra:123891971 810.061