Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01636 ATGCCAGAATCACATTCCTCCACCGCCATTGCTTCTTCTTCCACTTCCAACGATGAAACTTCTCAATCAGACCAAAATGCTGATGTATCGGAGAACCGTCCACGTCAGTCTCGGCGCGTGACCATCACCTACGGGAGATTCAACCGGAGATTGAGTATCACTGATGACTCTTCCATTGTTAGGGATGATAAATGGTCCTGTTTGGCCGTTATTTTCAGCCTTTGGTTCTTCGTTGCGGTGACAATGATAATGGGGGTTTATGGGTCGATGAGTGTGGCTCTAGGCCCATGTTCTTCCATTGTTTTTCAACCTAACCCTGTGTTTGTGCAATATGTGAAGGTAGAAAACTTACAGGAAAATCCAGGACTCATTCTTTATGGTACATATCAATATCCGTCTCTTGACGTTGTTTCCACTTGGAGACAAACTTATAATATATCTATTCCTTATGGCTCAGAAAAGGCAAGTATATATGAATGGAAATATTATCTGAATAGAGGGTCTGAAGTGAATATTTCATATAGCTTGAGCTCTGAGAACTCCTCTATTTATCTTGCAATTGCAGAAGGAGCTGAAAGCCTCTCAGTGTGGCTTGCTGACCCAACATATCCAAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACGCAGGAAATATTCAGGTCATCTAGCTATTATGTGGCATTGGGTAATTTGGAGCAAGAGGAGGTGGAGGTGGAATTAAACCTCACTGTAAAGGCCTTCTTGCATAATACAACAAATGCTTACTACAAATGTGCCCTGACTAGTAGTAGTCCATGTAGTCTGAATATCTTCTTTCCTGATGGAAACGCAGCTGTCTTAGTTTCTCCTGCTCCACAACAGAACACATCCAATGAAGAGTGGTATGTCAAACTGTCGTATGGACCAAGATGGCTTACATATATTTTTGGCATAGGTGGATTGACTGTGATTATGTTTTGGGCCTTCAACTTCTTGAACAAGCTTCAGAGTGCCCATGATGATCGAGTAGGATCTAGATCTGAAGGAACGGGTCCTGATCAAGCCCCTTTGCTTTCTCGCAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTACCACAGGATGAGGAGGATCTTGATTTTCTCGTTGGAGGTTCTACTGATGGGAAATGTTTAGGTGATGGTGAAACCAGTAATAATACTCGGCGTCTTTGTGCAATTTGTTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGAATGTGGAACTAGGATAGCTGAGGCAGCTGGTACATGTCCTGTTTGTCGTAGGAACATGAAGAAGGTGAGGAAAATTTTTACTGTATGA 1374 0.4258 MPESHSSTAIASSSTSNDETSQSDQNADVSENRPRQSRRVTITYGRFNRRLSITDDSSIVRDDKWSCLAVIFSLWFFVAVTMIMGVYGSMSVALGPCSSIVFQPNPVFVQYVKVENLQENPGLILYGTYQYPSLDVVSTWRQTYNISIPYGSEKASIYEWKYYLNRGSEVNISYSLSSENSSIYLAIAEGAESLSVWLADPTYPNTTLSWNMIHGTGMITQEIFRSSSYYVALGNLEQEEVEVELNLTVKAFLHNTTNAYYKCALTSSSPCSLNIFFPDGNAAVLVSPAPQQNTSNEEWYVKLSYGPRWLTYIFGIGGLTVIMFWAFNFLNKLQSAHDDRVGSRSEGTGPDQAPLLSRKDDDLSSWGSSYDSLPQDEEDLDFLVGGSTDGKCLGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01636 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 457 IPR013083 -
Trre14g01636 457 Pfam Domain of unknown function (DUF4792) 122 194 IPR032008 -
Trre14g01636 457 MobiDBLite consensus disorder prediction 340 374 - -
Trre14g01636 457 SMART ring_2 406 444 IPR001841 -
Trre14g01636 457 FunFam E3 ubiquitin-protein ligase APD2 395 456 - -
Trre14g01636 457 Pfam Zinc finger, C3HC4 type (RING finger) 403 451 - -
Trre14g01636 457 ProSiteProfiles Zinc finger RING-type profile. 406 445 IPR001841 -
Trre14g01636 457 Pfam Domain of unknown function (DUF4793) 218 325 IPR032010 -
Trre14g01636 457 SUPERFAMILY RING/U-box 405 451 - -
Trre14g01636 457 MobiDBLite consensus disorder prediction 1 35 - -
Trre14g01636 457 PANTHER OS05G0521000 PROTEIN 52 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01636 Trre-Chr14 14668053 14673517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01636 379 454 C3H Transcription Factor Family AT3G06140 30.263 4.46e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01636 - - tpra:123891971 804.283