Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01618 ATGCGCAAGTCTTTCAAAGATTCTCTCAAAGCTCTTGAAGCTGACATCCATTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCTGGATGGCGCCTGCGTTCAGATGAGATTGTCTTATAGCCCAGCTGCCCATTTGTTTCTTTTTCTTGTTCAGTGGACTGACTGTCAACTCGCCGGAGCCTTAGGATTGCTGAAAATTCTTATATACAAGGCATACAAGGATGGGAAGACAACCATGTCTATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCTTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGATAGGAAACAAAAACATCTGTGTGCTACTAGGTACAAACCTAAAGATGTGGTAGACAAAGGAAAAAGCTCTGAAATTGATACACAGAGAGAAGAAGAGTGTGATATTTGTCTGGAGATGAACACCATCGTTGTATTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTATCGAGACTGGAATGCAAGGTCTGAATCTTGCCCCTTTTGTAGAGACAGTCTAAAAAGAGTGAACTCTGGTGATCTTTGGATGTACATGAGAAGCAATGAGATAGATGATCTTGCTTCAATCAACAAAGAGAATTTAAAAAGACTATTTATGTACATAGAAAAGTTACCTCTTGTTGCTAGACCATATATTCACATGTTATCATCACATCTTGTGGTTGCTTCTTAG 735 0.3891 MRKSFKDSLKALEADIHFANTLASDYPSDLDGACVQMRLSYSPAAHLFLFLVQWTDCQLAGALGLLKILIYKAYKDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATRYKPKDVVDKGKSSEIDTQREEECDICLEMNTIVVLPNCNHSMCMKCYRDWNARSESCPFCRDSLKRVNSGDLWMYMRSNEIDDLASINKENLKRLFMYIEKLPLVARPYIHMLSSHLVVAS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01618 244 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Trre14g01618 244 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Trre14g01618 244 PANTHER RING FINGER PROTEIN 41, 151 3 229 - -
Trre14g01618 244 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Trre14g01618 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 192 IPR013083 -
Trre14g01618 244 FunFam RING/U-box superfamily protein 127 193 - -
Trre14g01618 244 SUPERFAMILY RING/U-box 136 189 - -
Trre14g01618 244 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01618 Trre-Chr14 14363001 14366847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01618 94 188 C3H Transcription Factor Family AT5G01960 30.000 1.22e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01618 K25840 - gmx:100814293 392.889