Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01617 ATGGGGTTTGTTCTGAAAAAAAACAAGAAGAAGGAATTAGAAGAAAAAGGAAAAATAGATATCATCATGCGCAAGTCTTTCAAAGATTCTCTCAAAGCTCTTGAAGCTGACATCCATTTTGCCAATACACTAGCTTCTGATTATCCAAGTGATCTGGATGGCGCCTGCGTTCAGATGAGATTGTCTTATAGCCCAGCTGCCCATTTGTTTCTTTTTCTTGTTCAGTGGACTGACTGTCAACTCGCCGGAGCCTTAGGATTGCTGAAAATTCTTATATACAAGGCATACAAGGATGGGAAGACAACCATGTCTATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCTTCTTTATTGCAACTTCACAGAGGAATCACTGATGTTGATGATAGGAAACAAAAACATCTGTGTGCTACTAGGTACAAACCTAAAGATGTGGTAGACAAAGGAAAAAGCTCTGAAATTGATACACAGAGAGAAGAAGAGTGTGATATTTGTCTGGAGATGAACACCATCGTTGTATTGCCCAATTGCAATCATTCAATGTGTATGAAATGCTATCGAGACTGGAATGCAAGGTCTGAATCTTGCCCCTTTTGTAGAGACAGTCTAAAAAGAGTGAACTCTGGTGATCTTTGGATGTACATGAGAAGCAATGAGATAGATGATCTTGCTTCAATCAACAAAGAGAATTTAAAAAGACTATTTATGTACATAGAAAAGTTACCTCTTGTTGCTAGACCATATATTCACATGTTATCATCACATCTTGTGGTTGCTTCTTAG 801 0.3808 MGFVLKKNKKKELEEKGKIDIIMRKSFKDSLKALEADIHFANTLASDYPSDLDGACVQMRLSYSPAAHLFLFLVQWTDCQLAGALGLLKILIYKAYKDGKTTMSIYERKASLKEFYGVVFPSLLQLHRGITDVDDRKQKHLCATRYKPKDVVDKGKSSEIDTQREEECDICLEMNTIVVLPNCNHSMCMKCYRDWNARSESCPFCRDSLKRVNSGDLWMYMRSNEIDDLASINKENLKRLFMYIEKLPLVARPYIHMLSSHLVVAS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01617 266 Pfam Zinc finger, C3HC4 type (RING finger) 165 211 - -
Trre14g01617 266 ProSitePatterns Zinc finger RING-type signature. 183 192 IPR017907 -
Trre14g01617 266 PANTHER RING FINGER PROTEIN 41, 151 25 251 - -
Trre14g01617 266 SMART ring_2 168 205 IPR001841 -
Trre14g01617 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 214 IPR013083 -
Trre14g01617 266 SUPERFAMILY RING/U-box 158 211 - -
Trre14g01617 266 ProSiteProfiles Zinc finger RING-type profile. 168 206 IPR001841 -
Trre14g01617 266 FunFam RING/U-box superfamily protein 149 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01617 Trre-Chr14 14363001 14366913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01617 116 210 C3H Transcription Factor Family AT5G01960 30.000 1.48e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01617 K25840 - gmx:100814293 393.66