Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01600 ATGAGCATTTCATTTGTCATAATCTCTAACAGAACAGCATTCCAATTCCTATGTTTTTTTCTTCTATACATTACCATATTTCATTACTCTTCAACTGCATCAACCTTGCAAGGAAATGAAACTGATTTACAAGCTTTACTTGACTTCAAGAGTAGAATAATTAAAGATCCATTTCACACACTAAGTTCATGGAATGATTCAATCCACCACTGCAACTGGTTAGGAATCACTTGTAAAATCTCCAATGGAAGAGTCATGCATTTGATCCTTGCAGACATGACATTAGCAGGAACTCTTACACCATCAATAGGAAATCTTACATATCTCACAAAACTTAACCTTAGAAATAATAGTTTCCATGGAGAGTTTCCTCAACAAGTTGGAAAATTATTATATCTTCAACATCTAAATATTAGTTATAATTCATTTAGTGGCAACATTCCAAGTAATCTAAGTCATTGCATAGAGTTAAGTATATTATCTTCTGGTCATAACAATTTCACAGGAAAAATTCCAACATGGATAGGAAATTTATCTTTATATCTACTTAACCTTGCAGTTAACAATTTGCATGGAACTATACCAAATGAGATAGGAAAGTTATCAAGACTAACACTTTTTGCAGTAAATGGAAATCATTTGCATGGAAAAATTCCTCTTGTAGTTTTTAATATTTCTTCTTTATCCTTTCTTACATTTTCTCAAAACAATTTTCATGGTAACTTACCTTATGATATTGGTTTCACTCTTCCTAATCTTGAAACATTTGCTGGTGGAGTCAATTATTTTACTGGAACAATACCTGAATCACTCTCTAATGCTTCAAGATTGAAAATTCTTGACTTTGCTGAAAATAGTCTCATTGGAACACTTCCTAAGAACATAGGAAGATTGACCCTTTTGACACGACTCAATTTTGATTCCAATAGACTAGGAAATGGTAAAGTCGGTGACCTGAATTTTATTACTTCTTTGATTAATTGTACTTTTCTTGAAGTTTTAGGTCTTGCCGATAATCGTTTTGGTGGAGAATTGCCTAGTTCAATTGCTAATCTTTCAACCAATTTGAATGATCTTGATTTAGGTAAAAATGCAATATATGGAAGTATCCCTATTGGAATAAGTAACCTTGTTAACTTAACCAGTTTTGGAGTGGGAAATAATCGCTTAAGTGGTTTTGTTCCTAATACAATAGGTATGCTTCATAGGTTGGTTAATTTAGAATTGTATAGCAACAATTTTTCTGGTGTGATCCCTTCCTCCATAGGAAACTTGACTAGTTTAATAAGTCTACTCATAGAGGATAACAACTTTGAGGGAAGTATACCACAAAGTCTTGGAAATTTGCAAAGTTTGTTGATGCTAAATTTGAGTCATAACAAGCTTAATGGTACTATACCAAGACAAATACTTTCCTTGTCTTCTCTTTCAATTTACTTAGACTTGTCTCATAATTCTCTCAAAGGCTCCTTGCCTTTTGAAGTAGGTAAGCTTGTTAATCTTGCAGAGTTGGATCTTTCGAAGAATAAATTGTCCGGAACGATTCCGTCCTCACTCGGAAGTTGTGCTAGTTTGGAAAGGCTGCATATGCAGGGAAACTTCTTTGAAGGAAATATTCCTTCAACTCTACAGAATTTGAGAGGTATACAAGATATCGACATGTCGTGCAATAATTTATCTGGGAAGGTTCCTGAATTTCTTGGTGAGATCAAAGGGCTAATGCATCTCAATCTTTCTTACAATGATTTTGAGGGAGAACTACCAATGAATGGAATCTTCAAAAATGCAACTTCCTTTTCAATTAGTGGAAATATCAAGCTATGTGGTGGTGTCTTAAAATTAAACCTACCTGCATGTACTATTAAAAAACCCTCTCCCTTTAAAAAATTTCATAACCCTAAGGTCAGTGTTCCTATAGCTAGTGCACTAGTATTTGTACTCGTTCTATCTTGTTTTGTAGCAATATTCATGATAAAAAGATCATCAAGAAAGAAAATTTCAAGAGAAACAATTACTACAAAGAACATGGAACTGAATATTTCTTACATGGAAATTGCGAAGTGCACCGGTGAATTCTCCCATGATAACTTGATTGGCTCAGGAAGTTTTGGTTCTGTGTACAAAGGAAAACTTTCATGTGACGGAACAATTATTGCAATTAAGGTATTGAATCTTGAACAAAGAGGAGCTTCAAAAAGCTTCATCAATGAATGTAATGTTCTAAGAGTCATAAGGCACCGCAACCTTCTCAAGATCATAACAGCAATCTCAAGTGTTGATAATCAAGGTAATGACTTCAAAGCACTAGTGTTTGAGTTCATGTGCAATGGAAGTCTAGAAGATTGGCTGCATCCTATAAATCAGACAAACAAACTGACATTTTTCCAAAGATTGAACATAGCAATTGATGTTGCTTGTGCACTTGACTATCTACACAACTCTTGTGAAACTCCAATTGTTCATTGTGATATAAAGCCAAGCAATGTACTTCTTGACAATGATATGGTAGCTCATGTTGGTGACTTTGGTTTAGCTACATTTCTGTTTGAAGAATCAAGTGATTCTCCCAAAAATTCAATTATGTCAGCTAGACTAAAGGGCTCTATTGGCTACATCCCTCCAGAGTATGGAGTGGGTGGACACCCTTCTGCACTAGGAGATGTTTACAGTTATGGGATACTATTGCTAGAGATTTTCACAGGAAAAAGACCAACAAATGAGATGTTTGAAGGTGGCATAGGAATTCAACAGTTTACAGCCTTAGCATTACAAAATCATGCCATAGATATAATTGATCCTTCATTGCTCTATGATCAAGAATTTAATGGAAAAGCTGATGATTATAGTGAAGAGATAGCATTAAGGAAGGAAAATGAACCTGGATACCTTTCTAGTATGGAGAATTGTTTGGTTTCTGTGTTGCAAATTGGAGTGTCATGCTCTTCAAATTCACCAAGTGAAAGGATACCTATGAATATGGTTGTCAACAAACTGCATGCAATCAAGAACTCATTTAAGATTTGA 3024 0.3449 MSISFVIISNRTAFQFLCFFLLYITIFHYSSTASTLQGNETDLQALLDFKSRIIKDPFHTLSSWNDSIHHCNWLGITCKISNGRVMHLILADMTLAGTLTPSIGNLTYLTKLNLRNNSFHGEFPQQVGKLLYLQHLNISYNSFSGNIPSNLSHCIELSILSSGHNNFTGKIPTWIGNLSLYLLNLAVNNLHGTIPNEIGKLSRLTLFAVNGNHLHGKIPLVVFNISSLSFLTFSQNNFHGNLPYDIGFTLPNLETFAGGVNYFTGTIPESLSNASRLKILDFAENSLIGTLPKNIGRLTLLTRLNFDSNRLGNGKVGDLNFITSLINCTFLEVLGLADNRFGGELPSSIANLSTNLNDLDLGKNAIYGSIPIGISNLVNLTSFGVGNNRLSGFVPNTIGMLHRLVNLELYSNNFSGVIPSSIGNLTSLISLLIEDNNFEGSIPQSLGNLQSLLMLNLSHNKLNGTIPRQILSLSSLSIYLDLSHNSLKGSLPFEVGKLVNLAELDLSKNKLSGTIPSSLGSCASLERLHMQGNFFEGNIPSTLQNLRGIQDIDMSCNNLSGKVPEFLGEIKGLMHLNLSYNDFEGELPMNGIFKNATSFSISGNIKLCGGVLKLNLPACTIKKPSPFKKFHNPKVSVPIASALVFVLVLSCFVAIFMIKRSSRKKISRETITTKNMELNISYMEIAKCTGEFSHDNLIGSGSFGSVYKGKLSCDGTIIAIKVLNLEQRGASKSFINECNVLRVIRHRNLLKIITAISSVDNQGNDFKALVFEFMCNGSLEDWLHPINQTNKLTFFQRLNIAIDVACALDYLHNSCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSDSPKNSIMSARLKGSIGYIPPEYGVGGHPSALGDVYSYGILLLEIFTGKRPTNEMFEGGIGIQQFTALALQNHAIDIIDPSLLYDQEFNGKADDYSEEIALRKENEPGYLSSMENCLVSVLQIGVSCSSNSPSERIPMNMVVNKLHAIKNSFKI 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01600 1007 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
Trre14g01600 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Trre14g01600 1007 FunFam Inactive leucine-rich repeat receptor-like protein kinase 327 619 - -
Trre14g01600 1007 SMART LRR_typ_2 449 473 IPR003591 -
Trre14g01600 1007 SMART LRR_typ_2 498 522 IPR003591 -
Trre14g01600 1007 SMART LRR_typ_2 377 400 IPR003591 -
Trre14g01600 1007 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515
Trre14g01600 1007 Gene3D Transferase(Phosphotransferase) domain 1 774 1006 - -
Trre14g01600 1007 SUPERFAMILY L domain-like 39 311 - -
Trre14g01600 1007 PRINTS Leucine-rich repeat signature 498 511 - -
Trre14g01600 1007 PRINTS Leucine-rich repeat signature 452 465 - -
Trre14g01600 1007 FunFam LRR receptor-like serine/threonine-protein kinase EFR 663 773 - -
Trre14g01600 1007 SUPERFAMILY L domain-like 354 609 - -
Trre14g01600 1007 Pfam Protein kinase domain 694 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01600 1007 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 261 1000 - -
Trre14g01600 1007 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Trre14g01600 1007 Gene3D Phosphorylase Kinase; domain 1 652 773 - -
Trre14g01600 1007 SMART serkin_6 692 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01600 1007 Gene3D Ribonuclease Inhibitor 248 315 IPR032675 -
Trre14g01600 1007 Gene3D Ribonuclease Inhibitor 157 247 IPR032675 -
Trre14g01600 1007 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 774 1007 - -
Trre14g01600 1007 Gene3D Ribonuclease Inhibitor 41 156 IPR032675 -
Trre14g01600 1007 Gene3D Ribonuclease Inhibitor 316 625 IPR032675 -
Trre14g01600 1007 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 326 - -
Trre14g01600 1007 ProSiteProfiles Protein kinase domain profile. 692 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01600 1007 SUPERFAMILY Protein kinase-like (PK-like) 676 998 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01600 Trre-Chr14 14149922 14153119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01600 39 1005 Receptor kinase-like Gene Family AT3G47570 45.120 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre14g01600 Pkinase 2.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01600 - - gmx:100785230 1460.28