Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01581 ATGTGTTCTTTGTTCATGCGACATCGTGCTTTCATAAATAACAAGGCATTACGTGATACTTTTTCTGCCTTTGGTACTGTGCTTTCTTGTAAGGTAGTTGTGGATAGCAATGGTCAATCAAGGGGATATGGTTTTGTTCAATTGGATAATGATGAGTCTACAAAGTATGCCATTGAACAATTGGATGGCATCTTGATCAATGATAAGAAAGTTTATGTCGGGCATTTTATTCGGCAACAAGAAAGGTCGGCAAATGGATCACCTATGTTCACAAAGTGTATATCAAAAACCCTTCTGAAACAGATATCGATGAGGACCTTAAACAACTCTTCAACATTTATGGGGATATAA 351 0.3704 MCSLFMRHRAFINNKALRDTFSAFGTVLSCKVVVDSNGQSRGYGFVQLDNDESTKYAIEQLDGILINDKKVYVGHFIRQQERSANGSPMFTKCISKTLLKQISMRTLNNSSTFMGI 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01581 116 SUPERFAMILY RNA-binding domain, RBD 12 87 IPR035979 GO:0003676
Trre14g01581 116 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Trre14g01581 116 PANTHER RNA BINDING PROTEIN 12 103 - -
Trre14g01581 116 SMART rrm1_1 3 74 IPR000504 GO:0003723
Trre14g01581 116 Gene3D - 9 94 IPR012677 -
Trre14g01581 116 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 71 IPR000504 GO:0003723
Trre14g01581 116 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01581 Trre-Chr14 13962001 13962351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01581 12 92 Eukaryotic Initiation Factors Gene Family AT1G22760 32.099 1.97e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01581 K13126 - cave:132184062 125.561