Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01564 ATGATGATTTCTATGGACTTGAATGCCTCTCCTGTGCCAGAGGAAGATGACGATCCTTTTGAAGGCCAGGTAGAAGAGTATAATGCGCCGCGAAAAGAAGAGTATAATGCGCCGCGAAAAGAAGAGTATATTGCGCCAGAAGAGCACATAGAAAGTGGAGCTGATATAGCGCGCCGGGAACGTGAAGAAAGAAAGATACGGTTGAAAAGAGAACGTTCAGATGACAGGCCTGTGCAAGTACCACCGGCACCTGGATATGATAATTTTTTCCATAATAAGATCCTTAAATCATATGATAGAAGTAAGCTTCCTCCGGGTTGGTTGAATTGCCCTTCATCTGGCCAGGAAATCTTTGGCTTGATACCTTCTAAGGTTCCATTGGGTGAAGCCTTCAATGACTATATTGTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTCATTGATTTGACAAATACTTCTAGATACTATCCAGTATCAGATCTAAAGAAAGAGGGTATCAAGCATGTTAAGATCCAATGCAAGGGTCGCGGTTCAGTACCTGATAATTCATCTGTTAATCATTTTGTGTATGAGGTTATACAATTTTTATCACATCAAAAACACTCAAAGAAGTATATACTAGTTCATTGTACACATGGTCATAATCGTACAGGATATATGATCATCCATTATCTAATGCGTACAATGTCAATGTCTGTTACTCAGGCAATAAAAATATTTTCTGATGCACGTCCTCCAGGAATTTATAAACCTGAGTATATCGATTCATTATATAAATTCTATCATGAAAAGAAGCCTGAAATGATAGTTTGTCCTCCTACTCCTGAGTGGAAGAGGACTCCCGAACTCGTGGATCTCAATGGTGAAGCAGCTCCAGATGACGGCGACGACGATGACGACGATGGAGTACCAGGTCCTCCGTTGCATGAGAACCACGAGATTGACACAATAATGACAAATGATGATGTTTTGGGAGATGAGGTACCTAATGATCAGCAATATGCATTTCGGCAGTTCTGCTTTCAGATACTCAAATTAGGGGCTGGGGCCAGAGGACACATGCAATTTCCAGGGTCGCACCCAGTTTCTTTAAACAGGGATAATTTACAGCTGTTGCGACAGCGTTACTACTATGCAACATGGAAAGCTGATGGAACAAGATATATGATGCTAATAACTATGGATGGATGCTACTTGATTGATAGAAACTTCAATTTTAGAAGAGTTCAAATGAGGTTTCCATGCAGGGGTACAAATGATGGCTTGGCAGAGAAGACTCACCACTTCACATTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCAAAAAAGCAGGAAAGGAGATACCTAATATATGATCTGATGGCAGTCAACCTCGTTTCAGTGATAGAGCGACCTTTCTGTGAACGGTGGAAGATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTACCAAGGCAAAAACCCTTACTATAGATATGACATGGAGCCTTTTAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAACTTTTGAACGAATTCATTCCGAAACTCTCGCATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAGTATGCTGATCTGAATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGTCAGCTTCTTTTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGAAGGTTCAGACCCCATGCTTTATTCTGGAAAGATTATCGAGTGTGCTTGGGATGGTGATAGAAACGAATGGATATTCAAGCGAGTCAGAACAGACAAGTCAACTCCCAATGACATCAATACTTACAAGAAGGTGATGCGAAGTATAAGAGACAATATCACAGAGGATGTCCTGTTGACTGAAATAAACGAGATAATCCGTCTTCCCATGTATGCCGACAGGATAAGAATTGATAGCAAAGGACACCACAATAATATAGCTAGGCGAAGGTAG 2097 0.4077 MMISMDLNASPVPEEDDDPFEGQVEEYNAPRKEEYNAPRKEEYIAPEEHIESGADIARREREERKIRLKRERSDDRPVQVPPAPGYDNFFHNKILKSYDRSKLPPGWLNCPSSGQEIFGLIPSKVPLGEAFNDYIVPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVSDLKKEGIKHVKIQCKGRGSVPDNSSVNHFVYEVIQFLSHQKHSKKYILVHCTHGHNRTGYMIIHYLMRTMSMSVTQAIKIFSDARPPGIYKPEYIDSLYKFYHEKKPEMIVCPPTPEWKRTPELVDLNGEAAPDDGDDDDDDGVPGPPLHENHEIDTIMTNDDVLGDEVPNDQQYAFRQFCFQILKLGAGARGHMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRNFNFRRVQMRFPCRGTNDGLAEKTHHFTLLDGEMIIDTLPDSKKQERRYLIYDLMAVNLVSVIERPFCERWKMLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLNSVDFLFEIDDDRQLLFLYERGKKKLMEGYIVAFEEGSDPMLYSGKIIECAWDGDRNEWIFKRVRTDKSTPNDINTYKKVMRSIRDNITEDVLLTEINEIIRLPMYADRIRIDSKGHHNNIARRR 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01564 698 MobiDBLite consensus disorder prediction 1 59 - -
Trre14g01564 698 MobiDBLite consensus disorder prediction 24 59 - -
Trre14g01564 698 MobiDBLite consensus disorder prediction 300 326 - -
Trre14g01564 698 ProSitePatterns Tyrosine specific protein phosphatases active site. 222 232 IPR016130 GO:0016311|GO:0016791
Trre14g01564 698 SUPERFAMILY Nucleic acid-binding proteins 572 683 IPR012340 -
Trre14g01564 698 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 334 570 - -
Trre14g01564 698 SMART dsp_5 137 277 IPR020422 GO:0006470|GO:0008138
Trre14g01564 698 Gene3D - 606 680 IPR012340 -
Trre14g01564 698 CDD Adenylation_mRNA_capping 345 570 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre14g01564 698 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 200 269 IPR000387 GO:0016311|GO:0016791
Trre14g01564 698 ProSiteProfiles ATP-dependent DNA ligase family profile. 456 597 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre14g01564 698 Pfam mRNA capping enzyme, C-terminal domain 574 667 IPR013846 -
Trre14g01564 698 Pfam Dual specificity phosphatase, catalytic domain 155 275 IPR000340 GO:0008138|GO:0016311
Trre14g01564 698 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 102 292 IPR029021 -
Trre14g01564 698 ProSiteProfiles Dual specificity protein phosphatase domain profile. 125 281 IPR020422 GO:0006470|GO:0008138
Trre14g01564 698 FunFam mRNA capping enzyme family protein 99 315 - -
Trre14g01564 698 FunFam mRNA-capping enzyme 591 684 - -
Trre14g01564 698 CDD RNA_5'-triphosphatase 106 273 - -
Trre14g01564 698 FunFam mRNA capping enzyme, putative 333 567 - -
Trre14g01564 698 Gene3D Protein tyrosine phosphatase superfamily 85 296 IPR029021 -
Trre14g01564 698 Pfam mRNA capping enzyme, catalytic domain 374 569 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre14g01564 698 PANTHER MRNA-CAPPING ENZYME 98 681 - -
Trre14g01564 698 PIRSF mRNA_capping_HCE 89 698 IPR017074 GO:0004484|GO:0006370|GO:0140818
Trre14g01564 698 Gene3D DNA ligase/mRNA capping enzyme 333 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01564 Trre-Chr14 13806969 13815204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01564 1 698 Protein tyrosine phosphatase (PTP) family AT3G09100 66.003 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01564 K13917 - gmx:100803597 1214.13