Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01555 ATGCTTCAGATTCGGCTTAGCAAGAATCCTTCGTCTGATGGATCGGCAGGGGTGAAGCATTCACCTGTCGAGACTGTTACGGTTGCATGCCCTGACCATTTAGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTACAGCTACTGGTTCTTCCGTTGTTAGGAATGTGGGTCGGAGATCTCGCCGTCAACTTGGTGAGCGGGTTCATTTCTGTGTTCGCTGTGATTACCCGATTGCTATTTATGGACGGCTGAGCCCTTGCGAGCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCATTGTGCTACCTATGTGATGAACGCATCCAGAAGATTCAGACAGTCAAAGTGATGGAAGGAATCCTAGTATGTGCAGCTCCTCATTGTCTCAAGTCATTCTTCAAGAGAGCTGAATTTGAATCTCATATCCAGGAATTGCACGCCGATCTTCTTCCCCCCAATCCAGATAAAGAAGACGGAAATGAGTCAGAGGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGTTCGAGGCCCCCAAAGGCAAGTTTTTTCACCAGGTTCGAATTCTCAACCCCATGATCTGGAAGACAGAACCCGTCGGCAACCAACAAGAGATCACACTCCTTCAAGACCAACAATGCAGCAAAAGCCCCCATTTTTTGGCCAACAACATCACTCCTCAGATACCATGTCTGGTTCTGTTGGAGGTATGCAACAGGGAATTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCCACAAGAACCTTCCCAGTTTACCGACAGGCAGCAATCAGTTGGTCCAGATAACTCATTTCCCGAGTATCCAACAATGCACCCTGCACAACCTACCAATGTCCCCCCACACTCAAACCCAATGCTGAACCCACCCGTGCCATTTGGTTATCCCCCTTACCCACAAGACCGATCCCAACCATTTTATGCTGCTTCCTATGATAATATGCCTAGGCAGGACTCAGCTTCTGATATAGGTGGAGACCCAAATTCATTAATGGGTTTCCCTCAAGGTGTCCCTAATGGCCCAAATTTTCAAGGAAATTATCCCCAGCCCTGGAATGCAGCAGGTGTTCCTTTTGAACAAGCACAAGGTGGTGGCATGGTTGTGGATCCAAGGGATGCCAAAGGTATACTGGCACCACAACCCATGGCCCTCCCACCACCACCACCGCCACCAGCACACATGATGAAACAGAACTACTATTCTGGTGAGCATGGACATGATGGTCAAGGTTATGGCTGGCAGCATGATAACCGTGACAGCTTTAATGGTCAAGGCTAA 1311 0.4844 MLQIRLSKNPSSDGSAGVKHSPVETVTVACPDHLVLADLPVAKGIGTATGSSVVRNVGRRSRRQLGERVHFCVRCDYPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTVKVMEGILVCAAPHCLKSFFKRAEFESHIQELHADLLPPNPDKEDGNESEAQSVRQPTASDSTVRGPQRQVFSPGSNSQPHDLEDRTRRQPTRDHTPSRPTMQQKPPFFGQQHHSSDTMSGSVGGMQQGIHQQSFDMQQHPPQEPSQFTDRQQSVGPDNSFPEYPTMHPAQPTNVPPHSNPMLNPPVPFGYPPYPQDRSQPFYAASYDNMPRQDSASDIGGDPNSLMGFPQGVPNGPNFQGNYPQPWNAAGVPFEQAQGGGMVVDPRDAKGILAPQPMALPPPPPPPAHMMKQNYYSGEHGHDGQGYGWQHDNRDSFNGQG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01555 436 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Trre14g01555 436 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Trre14g01555 436 MobiDBLite consensus disorder prediction 391 405 - -
Trre14g01555 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 426 IPR040383 GO:0016567|GO:0061630
Trre14g01555 436 MobiDBLite consensus disorder prediction 388 436 - -
Trre14g01555 436 MobiDBLite consensus disorder prediction 211 275 - -
Trre14g01555 436 MobiDBLite consensus disorder prediction 166 195 - -
Trre14g01555 436 MobiDBLite consensus disorder prediction 150 285 - -
Trre14g01555 436 MobiDBLite consensus disorder prediction 196 210 - -
Trre14g01555 436 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Trre14g01555 436 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Trre14g01555 436 MobiDBLite consensus disorder prediction 150 165 - -
Trre14g01555 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 153 IPR013087 -
Trre14g01555 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01555 Trre-Chr14 13707139 13710575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01555 1 432 C2H2 Transcription Factor Family AT5G01160 43.820 1.94e-102 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01555 K15685 - gmx:100817582 693.345