Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01498 ATGACAACTTTGCAGATGACCGATGTTGATTTAGAACAAGGAAATCATCATCATCATCAACAACATCATCATAATCATAATCATAGTTCTGTGAGTGGTGAAGGTAGTTTATGTTTTTCTGATGCTGATGATGGTTCAAGCTATTCACGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACTCTTTTGCTTGTGTTTCTGATCCTGAGCTTGGAGGTGGTGTTCATGATTCTGGTAGAGTTTCTTCTGTCACTGATTGTTCTGTTGAACTTGAAATTAGAATTGGGGTTCCTGAGATTAAGGTGCATTTAGCTAAAGTGGAGAAAGATTGTAGAATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAATCTGGTCCTCCAATTGAATTGGGTTGTTCTTGTAAAGAAGATTTAGCTGCTGCTCATAAAAACTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCAGTAGCGCGAAATGTTTACAGTGCAAATGAGGAATCAACGGAGAACGTAAGTGACAATAACAATGCTACCACATCATCCACGCTCTCAACAGCTGCTCCTACAGCAGAAACTCAAAGATTTTGGCACGGCCATCGTTTCTTGAATTTTCTACTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCATTTCAACATGCCATCAACTTAG 711 0.3854 MTTLQMTDVDLEQGNHHHHQQHHHNHNHSSVSGEGSLCFSDADDGSSYSRFYSTNGGSYDDYSFACVSDPELGGGVHDSGRVSSVTDCSVELEIRIGVPEIKVHLAKVEKDCRICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSANEESTENVSDNNNATTSSTLSTAAPTAETQRFWHGHRFLNFLLACMVFAFVISWLFHFNMPST 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01498 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 175 IPR013083 -
Trre14g01498 236 PANTHER ZINC FINGER, RING-CH-TYPE 16 235 - -
Trre14g01498 236 Pfam RING-variant domain 112 163 IPR011016 GO:0008270
Trre14g01498 236 MobiDBLite consensus disorder prediction 174 195 - -
Trre14g01498 236 CDD RING_CH-C4HC3_MARCH 112 164 - -
Trre14g01498 236 ProSiteProfiles Zinc finger RING-CH-type profile. 104 170 IPR011016 GO:0008270
Trre14g01498 236 SMART ringv_2 111 164 IPR011016 GO:0008270
Trre14g01498 236 MobiDBLite consensus disorder prediction 1 34 - -
Trre14g01498 236 SUPERFAMILY RING/U-box 109 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01498 Trre-Chr14 13278330 13281883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01498 76 236 C3H Transcription Factor Family AT5G05830 59.877 3.59e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01498 - - gmx:100808666 372.859