Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01491 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCATTTGCTTAAGAAATGCATACAACAATATGGTGAAGGAAAGTGGCATCGAGTTCCTCTATTGGCAGGTCTAAACAGATGCCGAAAGAGTTGTAGGCTAAGATGGTTGAACTATCTCCGTCCTAACATCAAGAGAGGAAATTTTGCTGAGGAGGAAGTTGAAATGATTGTCAAACTACACAAATTATTAGGCAACAGATGGTCCCTAATTGCAGGAAGGCTACCAGGAAGGACAGCAAATGATGTGAAAAACTATTGGAATTGTCATCTAAGCAAAAGAGTAAATGCTCTAGAAGCTGATCAAGATGGATCACAATTATCCAAAGATGTTCAAATCATTATGCCACAGCCAAGAAACAATGGTTCAAGCTCAACAACTAATCAAGTTCTAGTTGAACAAGAGAGTGACATGACAAAATTTGATGCTGATGGAAAGAACAATATGATTGAATCACAACAAGACATGATGATGTATTCATGCTTAGATCAACAAGGTATGTTTAGTGAGTTTCCAATGGACTTTCAATTAGAAGGATTTGAAGCTATGGTAAGTGGAGGAGAAGGTAGTAGTAGCCAATGGAATTGGGATGATTTGCTCTTAGATATGGATATGTATAATGATTTTTCTTCTTAG 666 0.3754 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKRVNALEADQDGSQLSKDVQIIMPQPRNNGSSSTTNQVLVEQESDMTKFDADGKNNMIESQQDMMMYSCLDQQGMFSEFPMDFQLEGFEAMVSGGEGSSSQWNWDDLLLDMDMYNDFSS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01491 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 150 - -
Trre14g01491 221 SMART sant 2 52 IPR001005 -
Trre14g01491 221 SMART sant 55 103 IPR001005 -
Trre14g01491 221 Gene3D - 4 55 - -
Trre14g01491 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Trre14g01491 221 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Trre14g01491 221 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Trre14g01491 221 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Trre14g01491 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Trre14g01491 221 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Trre14g01491 221 FunFam Myb transcription factor 3 55 - -
Trre14g01491 221 CDD SANT 58 101 IPR001005 -
Trre14g01491 221 Gene3D - 58 124 - -
Trre14g01491 221 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Trre14g01491 221 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01491 Trre-Chr14 13195922 13198364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01491 5 192 MYB Transcription Factor Family AT1G66370 46.154 1.61e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g01491 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01491 K09422 - gmx:100809746 332.413