Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01460 ATGGCTGAGGAGGGTTTTGAACATTACCATATTCCACAACAAAGCAGAAGAGAAAAGCTAAGATTTTTACCTCAAAACCAACCAAATTTCATTGAATCTTCAACAACCCTTCATCCAAATTATCCACCTTTACCTTCTCCCTACGATCCTTCACTCATTTCTTCTATTTTCTTATCTTCAACCAACCAAAACCACACTATTATGAATAATACTAACCCTTTACTTTATCAACAACAAAACCTTCGTGAATTCAACCATAGTTACACTGATGTTGGTAGTAGTAACAACAGTGAAGTAATGTTGTTAAAGTCTGAACCTTTATCTTTATCTTTATCATCTCACAAAAACAATTATCAGAATCAGATGAATATTCATCATCCTTTAGATGTTTCAAGGAACACAGTTCCATTAGGACCATTTACTGGTTATGCTTCTGTTTTGAAAGGATCAAGGTTTTTGAAACCTGCTCAACAATTATTAGATGAGATATGTTATGTTGGAGTTCGTGCTGATGAGAAAATTGCTACTGCTGTTGATGCATCTTTGATATTGGAAAATTATTATGATCAGGAAAGTAATGAAACTGTTAATGGTGCTGATGATACTGTTGGTGATGGAAATAATGAGGGTAGGAAGAACAAGTCTAGATTGTTAACTGTGCTTGATGAGATTTGCAGGAGGTACAGACAGTACTATCAGCAGATTCATGCAGTAATAACTTCGTTTGAATATGTTGCCGGTCTCGGTAATGCAGCACCGTATGCTACTTTGGCTATAAATGCCATGTCCAAACACTTTAGATGCTTGAAGAATGTGATTACTGACCAGCTTCAGTTTATCAGTAAGTCCAATTTTCAGATAAGCAATAGAAAGGATGAATCTTCAAGGTTTCGTAACGGTGATGGAGCCCTTTACAGCCAAAGACCAGGGTTTTTAGAGCACGTCCAACAACCTGTTTGGCGACCTCAAAGAGGACTCCCCGAGCGCGCTGTGAGTGTTCTCAAGGCATGGTTGTTTGAACATTTTCTGCATCCTTATCCTACTGATACTGACAAGCTAATGTTGGCTAAACAAACCGGTCTATCTCGTAACCAGGTATCTAATTGGTTTATAAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAGGAAATACATATGCTTGAATCACAACAATCTCAAAAGGAACCATCACAAAGAGAAGAACATAGTCGGAACAATTTAAGTGATAACAACATTGCTGATCAGAATCCATCTTCATCCACAGACATGTTTCACGATGTCGCATATAAACGAACTAGAAACGAACTTCACAATATGCCGGTACTGAATCAGCAAGTTGGTAATGTTGGAATGAGCGTGATGAATAACGGCGCAACAAGCAATGGCGTATCTCTAACACTTGGCCTTCATCAAAATCATGGAATGGGGTTGTCTGATCAACGATTCAACATGAGCGCTGCACAGCGTGTTGGTCTTGCACTTCTACCTGATAGCTACGTCTTGAGTGGTTTTCAGTTACAGAATATACAATTCGGGAGAGATTTTATCAGCGGGCAACTTTTGCATGACTTTGTAGGATGA 1584 0.3864 MAEEGFEHYHIPQQSRREKLRFLPQNQPNFIESSTTLHPNYPPLPSPYDPSLISSIFLSSTNQNHTIMNNTNPLLYQQQNLREFNHSYTDVGSSNNSEVMLLKSEPLSLSLSSHKNNYQNQMNIHHPLDVSRNTVPLGPFTGYASVLKGSRFLKPAQQLLDEICYVGVRADEKIATAVDASLILENYYDQESNETVNGADDTVGDGNNEGRKNKSRLLTVLDEICRRYRQYYQQIHAVITSFEYVAGLGNAAPYATLAINAMSKHFRCLKNVITDQLQFISKSNFQISNRKDESSRFRNGDGALYSQRPGFLEHVQQPVWRPQRGLPERAVSVLKAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQSQKEPSQREEHSRNNLSDNNIADQNPSSSTDMFHDVAYKRTRNELHNMPVLNQQVGNVGMSVMNNGATSNGVSLTLGLHQNHGMGLSDQRFNMSAAQRVGLALLPDSYVLSGFQLQNIQFGRDFISGQLLHDFVG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01460 527 SMART HOX_1 320 384 IPR001356 GO:0003677
Trre14g01460 527 CDD homeodomain 320 381 IPR001356 GO:0003677
Trre14g01460 527 SMART prehox3 141 275 IPR006563 -
Trre14g01460 527 FunFam BEL1-like homeodomain protein 9 323 385 - -
Trre14g01460 527 Gene3D - 323 385 - -
Trre14g01460 527 ProSiteProfiles 'Homeobox' domain profile. 317 380 IPR001356 GO:0003677
Trre14g01460 527 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 402 - -
Trre14g01460 527 Pfam Homeobox KN domain 337 376 IPR008422 GO:0003677|GO:0006355
Trre14g01460 527 Pfam Associated with HOX 146 274 IPR006563 -
Trre14g01460 527 SUPERFAMILY Homeodomain-like 322 387 IPR009057 -
Trre14g01460 527 MobiDBLite consensus disorder prediction 389 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01460 Trre-Chr14 12880792 12884507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01460 85 527 Homeobox Transcription Factor Family AT5G02030 46.813 6.65e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre14g01460 POX 6.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01460 - - mtr:11409415 736.873