Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01409 ATGGCCAGAGCTTTAGATTTCATTAAGGATATCAATGATGGAAAGGAACTTTGGAAACTTGCTGTCCGACTGGAAGATATTTGGAAAACTGGTATAGGGAAAGGTGAACACTTGGAGTTTATCATTCTGGACAAACAGGGAGATAACATTCATGTGGTTCTTCCATCTGATCTTTGCCCTTTGTTTGAGTCTAAACTTGAAGAAGGAGCCACATACATCATGAAAAATTTTAAAGTCCAGCCAAATGATTTGAAGGTCAAATTCTGTGATCACCCTTTCACATTGGTTGGATTTGCCGGTGACGGAGGATCTGATATTATTCCAACAAAGATACCAAACATTCCCAAATATAAGTTTAATTTCAAATCTTTTGATGAAATCAAACATGGCAAGTACCGCGCTGATCTGTTAGTAGATATCATAGGTGCTGTGCATGAGGTTAAACCGGATAAAAAATCATTTGGATCAAAGAAACTCCCAACGACCTTTTCTTTGGCTGATGCGTCGATGAACATACTTACATGCTCCCTATGGGGTAAGTATCAAACTGAATTTCTTGCCAACTACAACGAGAACGCCTGTGGAGGTCCAGTTATTGTCATTCTTAAACATGCTGCTATCAAGGAACCTCAAGGTATATATGACTTACAAATTACAAATGCATGGAGTGGGACAAAGTTAATCATGGATCAAGATTTTGAAGAGGCAAAAGACTTCAAAGCACTCTTACCTCTGGATTTTGTCACCCAAACTCAGTCTTCAAACAACTTAAGTGAGGGTAGTAGTTTACAGATACAAAACTCTCAAACCTCTCAGTATTCTGCAGGATCTCGCTATGCCTTTCGTGCCCCAGTCACTCACATTAGTCAACTCATCACACTCCCGGAGGAGGAAATCGTAACTACTGTTGCCACACCACACCATGTTTGCTTATCAAAACATGGGTGGTATTACAAATCTTGTGCTGAATGCTCTAAACAACTTATTACTGATACACCACCTTACAAATGCAAAGTTGATGCACATGTCACTCCTGAACCCATTATCAAATACAAGGTTGAAGCTGAAGTTCGTTATGAAGGTCATAAAGCAAAATTCCTTTTCTGGGACCGTGAATGTACCGATCTCATAGGCAAAACTGCATCTGAGTTGCAGGCTATTATGCTTGAAGCTGGTGCATTTGACCCCCATGAATATCCTCTTGACTTAGACAAAATAACAGGAATTGAATTAGCTTTTAAAGTGAAGATTCAGGCCAAAGGAAAACTTTCCAGTGTCCTTACATTGAAAGATGATCCTGAAATCATCCAATATCTCAAAGACCAACTCATCCTTACTGAGATCCCATCTCAGTTGTCCCTCCCTGCTACAAATCTTGGAGAGTCTTCTCAATTGCTTCTAACACCTATTCCTGAAACATCTGACATCTTTGCTTTTCCAACTCAAGACCTCGCCACTACCGCTGAGTCTGAACCTGATATGATGAAAATGCACACCCCTGCAAAACGTTCAGGGGAAGAAGCTCCAAATGATGATCCAAACTCTGCCAAGCTATCTTCAAACAAAATCACTCTCAGGTCTACAATCAAGAAAGAAAAATTATCAGCGAAAACTCTTGAAGACTAA 1626 0.3991 MARALDFIKDINDGKELWKLAVRLEDIWKTGIGKGEHLEFIILDKQGDNIHVVLPSDLCPLFESKLEEGATYIMKNFKVQPNDLKVKFCDHPFTLVGFAGDGGSDIIPTKIPNIPKYKFNFKSFDEIKHGKYRADLLVDIIGAVHEVKPDKKSFGSKKLPTTFSLADASMNILTCSLWGKYQTEFLANYNENACGGPVIVILKHAAIKEPQGIYDLQITNAWSGTKLIMDQDFEEAKDFKALLPLDFVTQTQSSNNLSEGSSLQIQNSQTSQYSAGSRYAFRAPVTHISQLITLPEEEIVTTVATPHHVCLSKHGWYYKSCAECSKQLITDTPPYKCKVDAHVTPEPIIKYKVEAEVRYEGHKAKFLFWDRECTDLIGKTASELQAIMLEAGAFDPHEYPLDLDKITGIELAFKVKIQAKGKLSSVLTLKDDPEIIQYLKDQLILTEIPSQLSLPATNLGESSQLLLTPIPETSDIFAFPTQDLATTAESEPDMMKMHTPAKRSGEEAPNDDPNSAKLSSNKITLRSTIKKEKLSAKTLED 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01409 541 Gene3D - 113 244 IPR012340 -
Trre14g01409 541 Gene3D - 5 99 IPR012340 -
Trre14g01409 541 CDD RPA1_DBD_A_like 19 93 - -
Trre14g01409 541 Gene3D - 264 430 IPR012340 -
Trre14g01409 541 CDD RPA1_DBD_B_like 139 244 - -
Trre14g01409 541 SUPERFAMILY Nucleic acid-binding proteins 7 96 IPR012340 -
Trre14g01409 541 SUPERFAMILY Nucleic acid-binding proteins 119 250 IPR012340 -
Trre14g01409 541 MobiDBLite consensus disorder prediction 495 510 - -
Trre14g01409 541 SUPERFAMILY Nucleic acid-binding proteins 295 418 IPR012340 -
Trre14g01409 541 MobiDBLite consensus disorder prediction 487 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01409 Trre-Chr14 12325598 12328646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01409 1 417 Core DNA Replication Machinery Family AT5G08020 22.171 8.18e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01409 - - tpra:123891620 326.635