Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01385 ATGTCTTATAGCTATTTCCCCATTAGTTACCAAAGAAAGATGGAATACAACCCTAATAAATCTGACCAAAGATGGAGCTCAGATGATCTAGGTGGTCCTGGTCAAGTTAGGTCTTATTCTTGTACCTTTTGCAAGAGAGGATTTTCAAATGCTCAAGCATTAGGAGGCCACATGAACATCCATAGAAGAGATAGAGCCAAGCTCAAACAATCTTCCGAAGAAAATTCGCTTTCTTTGGACATCTCAACCAAGAACACAAATGATCCTGACCATATTGATTTGGAACATAATCATGAAACTCAAAGGGGAAAGTTTACAAAAGAATTTCCTCGTAGTTCTTCATTTGTTGATATAAAGGGAGGTGGTGTTATGGCTCAAAGGATTGAAGAGAAGAAATGTGATATAGATCTTGAGCTTAGGTTAGGTTATGAGCCAATAGATTCATCGACATTGAGTACTCGATCATTCTTTTGA 474 0.3755 MSYSYFPISYQRKMEYNPNKSDQRWSSDDLGGPGQVRSYSCTFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENSLSLDISTKNTNDPDHIDLEHNHETQRGKFTKEFPRSSSFVDIKGGGVMAQRIEEKKCDIDLELRLGYEPIDSSTLSTRSFF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01385 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Trre14g01385 157 MobiDBLite consensus disorder prediction 63 94 - -
Trre14g01385 157 Gene3D Classic Zinc Finger 31 114 - -
Trre14g01385 157 PANTHER OS07G0101800 PROTEIN 19 97 - -
Trre14g01385 157 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Trre14g01385 157 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01385 Trre-Chr14 12086262 12086735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01385 35 150 C2H2 Transcription Factor Family AT3G53820 38.525 7.01e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g01385 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01385 - - mtr:25498560 231.876