Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01363 ATGTTGAATTCTTGTGGAGAAGATGAATTGTATGAACAATTATGGAAGGCTTGTGCTGGTCCTCATGTTGAAGTTCCTCGTGCAGGACAAATGGTTTACTATTTTCCTCAAGGACACATGGAACAATTAGAAGTATCAACAAATCAAGAACTAAATCAGAGGATTCCATTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCTGAACAAGAAACAGATGAAGTTTATGCACAGATAACTCTGGTTCCAGAATCCAATCAAACTGAGCCTACAAGCCTTGATCCAAGTCCTGCTGAACCTCCAAGACCGAAAACTCACTCCTTCTCGAAGGTCTTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTGTTCTTAGGAAGCATGCCACAGAATGTCTTCCTCCTTTGGATTTGTCCCAATCTACTCCAACTCAGGAATTGGTTGCTAGGGACCTTCACAATTATGAATGGCACTTTAAGCATATATTTAGAGGTCAACCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTCGTGACTTCCAAGAGATTAGTCGCTGGAGATACATTTGTATTTCTGAGAGGGGAAAACGGAGAATTACGCGTTGGAGTGAGACATCTTGCTTCTCCACAGAGCTGCATGCCTTCATCCGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGCTGCAACTCAAACTCTTTTTGTAGTATACTATAAGCCCAGGATGAGCCAGTTCATTATAACTGTGAATAAATATATGGAAGCTATCAACCAAAAATATTGTGTTGGCATGAGGTTCAAGATGAGTTTTGATGGGGATGATTCCTCTGAGACTGACAAAAGATTTTCCGGCACAATAATTGGACAAGAGGATATTTCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGAGCCTGCATCTATTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCCCTTCTGGCTTCGGTTCCTACATCTCTTCAACCTGCCCCTGCTGCTGTAAAATATAAAAGGCCTAGACTACCTAGTGAAGTTCCAGATCTTGGTGACACACTAGGTGACTCTACTTACTGGGAAGCTGGGTTGACACAATCAGACGTAACACAAGTTAATATTATGTCGGAAAACAAAAGGAGTGAAAGTATGCATATGTGGCTTCATAAGCAAACTGATAATAGCAGCTGCAATGGTATATCAAGGAATCCGACAGACGGAAGTTGGCTATCCTCTCCTCATTCTAGTGGTCCTTCTAATTTGTGTCAGGACACGACCGACGATAGCAAGAGTGTCAATGTCTCAACTTGGCCTATTTCAAAAACTCACTCAGAAATATTGAACAACAATGATCATTTCATTGACAAAGTTGACACGGAGAAAAAAATAGAGGCTGCTACAAGCTGTAGATTGTTTGGGATTGATCTTAACGATCGCAGCAGGAACTCTCAAAAGGCATCTGAATATCCAGAAAATGTATTTGGAGTCCCTTCTGAGGGATGTGTTGCCGCTCCCTTGTCAAGAACTGATGCAGACCAAAATAAGTTTGATATCTCAAAGTCTTTAAAAGAAAGGAAACAAGAACAGTCACAAATATCTCCAAATGAAACACAAAGCAAGCAAACCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCGGTGGACTTGACCGCGTTGCATGGATACGGTGAACTTATTGATGAATTGGAGAAGCTGTTTGACATAAAGGGACAGATTCAACCTAGGAACAAGTGGGAAATCGTCTTCACTGATGATGAAGGGGATATGATGCTTGTCGGTGATGATCCATGGCCGGAATTTTGCAATATGGTGAAAAGAATCTTCATTTGTTCAAGCCAAGATGTACACAAAATGAGCACAGGAACCAAATTACCTATCTCATCAATAGAAGAGACTGTAATAAGCTCAGACACAGCTGAGATATGA 2040 0.4152 MLNSCGEDELYEQLWKACAGPHVEVPRAGQMVYYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPSPAEPPRPKTHSFSKVLTNSDTSTHGGFSVLRKHATECLPPLDLSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAAATQTLFVVYYKPRMSQFIITVNKYMEAINQKYCVGMRFKMSFDGDDSSETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDEPASIPRPDRISPWEIEPLLASVPTSLQPAPAAVKYKRPRLPSEVPDLGDTLGDSTYWEAGLTQSDVTQVNIMSENKRSESMHMWLHKQTDNSSCNGISRNPTDGSWLSSPHSSGPSNLCQDTTDDSKSVNVSTWPISKTHSEILNNNDHFIDKVDTEKKIEAATSCRLFGIDLNDRSRNSQKASEYPENVFGVPSEGCVAAPLSRTDADQNKFDISKSLKERKQEQSQISPNETQSKQTNSRSCTKVQMQGVAVGRAVDLTALHGYGELIDELEKLFDIKGQIQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVHKMSTGTKLPISSIEETVISSDTAEI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01363 679 MobiDBLite consensus disorder prediction 546 571 - -
Trre14g01363 679 CDD B3_DNA 113 214 IPR003340 GO:0003677
Trre14g01363 679 Pfam AUX/IAA family 550 654 IPR033389 -
Trre14g01363 679 SUPERFAMILY DNA-binding pseudobarrel domain 100 244 IPR015300 -
Trre14g01363 679 Pfam Auxin response factor 241 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre14g01363 679 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 657 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre14g01363 679 ProSiteProfiles PB1 domain profile. 569 650 IPR000270 GO:0005515
Trre14g01363 679 MobiDBLite consensus disorder prediction 555 571 - -
Trre14g01363 679 FunFam Auxin response factor 564 657 - -
Trre14g01363 679 FunFam Auxin response factor 276 349 - -
Trre14g01363 679 MobiDBLite consensus disorder prediction 416 457 - -
Trre14g01363 679 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Trre14g01363 679 SUPERFAMILY CAD & PB1 domains 567 645 - -
Trre14g01363 679 Gene3D - 564 657 - -
Trre14g01363 679 Pfam B3 DNA binding domain 115 214 IPR003340 GO:0003677
Trre14g01363 679 Gene3D - 112 216 IPR015300 -
Trre14g01363 679 SMART B3_2 115 217 IPR003340 GO:0003677
Trre14g01363 679 FunFam Auxin response factor 113 217 - -
Trre14g01363 679 Gene3D - 276 349 - -
Trre14g01363 679 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01363 Trre-Chr14 11886935 11891795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01363 1 662 B3 DNA Binding Superfamily AT4G23980 57.926 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre14g01363 AUX_IAA 3.2e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01363 K14486 - gmx:100803911 967.992