Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01362 ATGATGTTGAATTCTTGTGGAGAAGATGAATTGTATGAACAATTATGGAAGGCTTGTGCTGGTCCTCATGTTGAAGTTCCTCGTGCAGGACAAATGGTTTACTATTTTCCTCAAGGACACATGGAACAATTAGAAGTATCAACAAATCAAGAACTAAATCAGAGGATTCCATTGTTCAAACTTCCCAACAAGATCCTTTGTCGTGTTGTCAATGTTCATTTACTGGCTGAACAAGAAACAGATGAAGTTTATGCACAGATAACTCTGGTTCCAGAATCCAATCAAACTGAGCCTACAAGCCTTGATCCAAGTCCTGCTGAACCTCCAAGACCGAAAACTCACTCCTTCTCGAAGGTCTTAACTAACTCTGATACAAGTACTCATGGTGGCTTTTCTGTTCTTAGGAAGCATGCCACAGAATGTCTTCCTCCTTTGGATTTGTCCCAATCTACTCCAACTCAGGAATTGGTTGCTAGGGACCTTCACAATTATGAATGGCACTTTAAGCATATATTTAGAGGTCAACCACGTAGACACTTGCTCACAACTGGATGGAGTACTTTCGTGACTTCCAAGAGATTAGTCGCTGGAGATACATTTGTATTTCTGAGAGGGGAAAACGGAGAATTACGCGTTGGAGTGAGACATCTTGCTTCTCCACAGAGCTGCATGCCTTCATCCGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGCTGCAACTCAAACTCTTTTTGTAGTATACTATAAGCCCAGGATGAGCCAGTTCATTATAACTGTGAATAAATATATGGAAGCTATCAACCAAAAATATTGTGTTGGCATGAGGTTCAAGATGAGTTTTGATGGGGATGATTCCTCTGAGACTGACAAAAGATTTTCCGGCACAATAATTGGACAAGAGGATATTTCTTCACACTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGAGCCTGCATCTATTCCAAGACCTGATAGAATTTCACCATGGGAGATAGAACCCCTTCTGGCTTCGGTTCCTACATCTCTTCAACCTGCCCCTGCTGCTGTAAAATATAAAAGGCCTAGACTACCTAGTGAAGTTCCAGATCTTGGTGACACACTAGGTGACTCTACTTACTGGGAAGCTGGGTTGACACAATCAGACGTAACACAAGTTAATATTATGTCGGAAAACAAAAGGAGTGAAAGTATGCATATGTGGCTTCATAAGCAAACTGATAATAGCAGCTGCAATGGTATATCAAGGAATCCGACAGACGGAAGTTGGCTATCCTCTCCTCATTCTAGTGGTCCTTCTAATTTGTGTCAGGACACGACCGACGATAGCAAGAGTGTCAATGTCTCAACTTGGCCTATTTCAAAAACTCACTCAGAAATATTGAACAACAATGATCATTTCATTGACAAAGTTGACACGGAGAAAAAAATAGAGGCTGCTACAAGCTGTAGATTGTTTGGGATTGATCTTAACGATCGCAGCAGGAACTCTCAAAAGGCATCTGAATATCCAGAAAATGTATTTGGAGTCCCTTCTGAGGGATGTGTTGCCGCTCCCTTGTCAAGAACTGATGCAGACCAAAATAAGTTTGATATCTCAAAGTCTTTAAAAGAAAGGAAACAAGAACAGTCACAAATATCTCCAAATGAAACACAAAGCAAGCAAACCAATAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCGGTGGACTTGACCGCGTTGCATGGATACGGTGAACTTATTGATGAATTGGAGAAGCTGTTTGACATAAAGGGACAGATTCAACCTAGGAACAAGTGGGAAATCGTCTTCACTGATGATGAAGGGGATATGATGCTTGTCGGTGATGATCCATGGCCGGAATTTTGCAATATGGTGAAAAGAATCTTCATTTGTTCAAGCCAAGATGTACACAAAATGAGCACAGGAACCAAATTACCTATCTCATCAATAGAAGAGACTGTAATAAGCTCAGACACAGCTGAGATATGA 2043 0.4151 MMLNSCGEDELYEQLWKACAGPHVEVPRAGQMVYYFPQGHMEQLEVSTNQELNQRIPLFKLPNKILCRVVNVHLLAEQETDEVYAQITLVPESNQTEPTSLDPSPAEPPRPKTHSFSKVLTNSDTSTHGGFSVLRKHATECLPPLDLSQSTPTQELVARDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRHLASPQSCMPSSVISGQSMHLGVLATASHAAATQTLFVVYYKPRMSQFIITVNKYMEAINQKYCVGMRFKMSFDGDDSSETDKRFSGTIIGQEDISSHWLNSKWRSLKVQWDEPASIPRPDRISPWEIEPLLASVPTSLQPAPAAVKYKRPRLPSEVPDLGDTLGDSTYWEAGLTQSDVTQVNIMSENKRSESMHMWLHKQTDNSSCNGISRNPTDGSWLSSPHSSGPSNLCQDTTDDSKSVNVSTWPISKTHSEILNNNDHFIDKVDTEKKIEAATSCRLFGIDLNDRSRNSQKASEYPENVFGVPSEGCVAAPLSRTDADQNKFDISKSLKERKQEQSQISPNETQSKQTNSRSCTKVQMQGVAVGRAVDLTALHGYGELIDELEKLFDIKGQIQPRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFICSSQDVHKMSTGTKLPISSIEETVISSDTAEI 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01362 680 SUPERFAMILY CAD & PB1 domains 568 646 - -
Trre14g01362 680 Gene3D - 277 350 - -
Trre14g01362 680 MobiDBLite consensus disorder prediction 556 572 - -
Trre14g01362 680 FunFam Auxin response factor 114 218 - -
Trre14g01362 680 Pfam B3 DNA binding domain 116 215 IPR003340 GO:0003677
Trre14g01362 680 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Trre14g01362 680 MobiDBLite consensus disorder prediction 91 121 - -
Trre14g01362 680 Pfam AUX/IAA family 551 655 IPR033389 -
Trre14g01362 680 Gene3D - 565 658 - -
Trre14g01362 680 SMART B3_2 116 218 IPR003340 GO:0003677
Trre14g01362 680 ProSiteProfiles PB1 domain profile. 570 651 IPR000270 GO:0005515
Trre14g01362 680 SUPERFAMILY DNA-binding pseudobarrel domain 101 245 IPR015300 -
Trre14g01362 680 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre14g01362 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 658 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre14g01362 680 Gene3D - 113 217 IPR015300 -
Trre14g01362 680 MobiDBLite consensus disorder prediction 417 458 - -
Trre14g01362 680 FunFam Auxin response factor 565 658 - -
Trre14g01362 680 MobiDBLite consensus disorder prediction 547 572 - -
Trre14g01362 680 CDD B3_DNA 114 215 IPR003340 GO:0003677
Trre14g01362 680 FunFam Auxin response factor 277 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01362 Trre-Chr14 11886932 11891795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01362 2 663 B3 DNA Binding Superfamily AT4G23980 57.926 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre14g01362 AUX_IAA 3.2e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01362 K14486 - gmx:100803911 967.992