Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01311 ATGGCCACCATGGAACGCCGAAAAACGCTGACCATGAATTGGGACGGCCTCGGCGACGATGAAGACGATATGCATTTCTTTGAGACCTATAACCGTCTCTCAACTGCCGTCCCTGATGATTTAGCTTCTTCCTCTGATGAAGATGAAGATTATGAAGATAGCAGATTATCCTTCGCCTCTGCTGCTTCCTCTTTTGTTCCTGCAAAACATCGAAAACCGGAACTTCCACCGGCATCTGCAATTACTCCGAATTATGATATCTGGATGGCTGCTCCTGGATCGATTACAGAAAGAAGACGAAGATTGTTAGGAAGCATGGGATTGGATGATCATAAAGAAAATCTTAAAGCCACTAGCGACGCCATTGGTCGCGCCATCACGAAAAAGTTTGACAATAGCAATCAAGAAAAAACTCCAACTCCTTCTTCTTCAATTTCGGTCAATTCTGGTACAAATTCATCTTCGTCGTCATCTACAGTTTCTGCAACTTCCTCTGGTGGCTCGATTCAACAAAATAGAGAGCAGTCGCCTGTTCAATATGTTCTTGTTCGGTCGCGATCAGAAGGTGATATTGATTTTTTTTCAATGGCAAAATTAAGAAAGGAAGAAATGATTGGAAAAATTTCGAAGCAGAGGTTAACGAGAACCTCTACTGAAATAGGTGTGCCGTGCACGCGTGCACGGCATGTAGATGGAAATAGGATTATTATGAGGGATTCTGCTGAATCCTCCATGAGACAGTTACCACCGATGTCACCGGTGGTAACACCTGGTTCAGGAGGAGTTGGAGCATTCTTTTTGATAAAAAATTTAGATACTGGAAAAGAGTTTATTGTAAAGGAATACGGCGAAAATGGAACGTGGAATCGGTTAAGCGATTTAGAGACAGGTAAACAGTTAACAATGGAGGAATTTGAAAACACCGTGGGACATTCTCCGTTTATAAAGGATATTATGAGACGGGGTAATTATGGAAGACATGATGGTTATGGTAAAAAGTTAGCTTCAAATTCTGTTATATTAAGGAGTTTAAGGTTAAGTAAAAGAAAAAGTGCTTCATTGTTGAAGAATATTAAAGGTGTAGCAAGTGGAATTGTTGGTGAACGCGAAAGAGAAATGGCTGCGCCGCAAGTGGTTGAACAACATCAACAAAAGAAACCTGAAGGGAAGAACAAATGGGTTAAGGTTAGACAAAGTGGGAAATCACAAAAGGATCTTTCAGCTTTACATTTGTGTCAAGAGTTTCAAGCACATGAAGGGTGTATTTGGACTATTAAGTTTAGTTTGGATGGAAGGTTTTTGGCTAGCGCGGGCGAAGATAAAGTGATTCATGTTTGGGAAGTTCAAGAATGTGAGGTTATGAGTATGAAACCTGAGGAAGGGAATCTTACTCCTATTCATCCTTCTTTGATGTCTTCTATGGAAAGAGGTGTTGAGACTCAAAATTTGGGGAAGAAGAAAGGGAAATTTGGAAGTAAAAGAGGAGGGAGTGCTGCTATTCCTGAATATGTTCATGTTCCTGAAAATGTTTTTACTTTTTCTGAGAAACCTTATTGTTCTTTTCATGGTCATTTGGATGAAGTTTTGGACTTATCTTGGTCTAGATCTCAGCTACTTCTTTCATCTTCAATGGACAAGACAGTGAGATTGTGGGATTTGGATACTAAGACATGCTTGAAATTCTTTGCACATAATGATTATGTAACCTGTATTCAATTCAACCCTATGGATGATGATTATTTCATTAGTGGCTCCCTTGATGCTAAGGTCAGAATGTGGAACATCCCTGCTCGTCTTGTCGTTGATTGGACTGACATTCATGAAATGGTTACAGCTGTTTCTTACACCCCTGATGGTCAAGGTGTTCTCGTCGGTACACAAAAGGGAAGTTGTCGTACTTATAGCATAGAAGATTACAAATTATCTCAAACAAACACTGTTGAACTTCGAAACAAGAAGAAATCTCAGCTAAAAAAAGTTACTGGTTTTCAGTTTTCCCCAAGTAATCCATCAGAAGTGCTTGTTACTTCAGCTGATTCCAGGATAAGAATTGTGGATGGTATAGAAGTTATTCATAAATTTAAAGGATTTCGAAATGCAAATAGCCAAATGGCAGCTTCATTTACTCCAAATGGAAGATTCATCATAAGTGCCAGTGAAGATTCACAAGTTTATGTATGGAAGCATGAAGAGCATAAACATTCAAGTACAGGAAAATCTAGAGCTATTCTAATCACTCAATCTCATGAGCATTTTCCATGTAAAGATGTTTCAGTAGCAATACCTTGGCCATGTATGATCAAAGGTGATCCACCACAAATCCCAATTAGTAATGGCAAAAAACACTCAAAAAGAATGCTTCCACCTCTTCCAAAGAAAGGTAACAATAACCATGTAACCGAAAGTGCATCAAATTCGCCAGAGCACGACCATTCATCGCTATCGCGAAGCGAATCAGGAATAGGTGATTCGTTCTCGAATAGTAAGAGAATGTTGCCACCTCATCCAAAGAAAGAAAGTGAAATAGAAGAAGACGGTGAAGCGATTTCTAGGACGAATTCAGGAATCGGTGATTCGTTTTCTTCGGATCCATCTTCAATTAGATACGGCGATTCACCTTCTATATCGGCTGCAGCTAATCCATCAAGTGATTCTTGGTCTTCTAATTATTCATCATATGATGGTAATCATGGTTCCTCAGCAATTCATCCTTCAGCATGGGGTTTGGTAATAGTGACGGCCGGATTCGGAGGCGAAATAAGGTGTTATCAGAATTTTGGATTACCAAGAAGGATGGGGAGACAAGTATTTGGGAGCCCTGCTTAA 2826 0.3981 MATMERRKTLTMNWDGLGDDEDDMHFFETYNRLSTAVPDDLASSSDEDEDYEDSRLSFASAASSFVPAKHRKPELPPASAITPNYDIWMAAPGSITERRRRLLGSMGLDDHKENLKATSDAIGRAITKKFDNSNQEKTPTPSSSISVNSGTNSSSSSSTVSATSSGGSIQQNREQSPVQYVLVRSRSEGDIDFFSMAKLRKEEMIGKISKQRLTRTSTEIGVPCTRARHVDGNRIIMRDSAESSMRQLPPMSPVVTPGSGGVGAFFLIKNLDTGKEFIVKEYGENGTWNRLSDLETGKQLTMEEFENTVGHSPFIKDIMRRGNYGRHDGYGKKLASNSVILRSLRLSKRKSASLLKNIKGVASGIVGEREREMAAPQVVEQHQQKKPEGKNKWVKVRQSGKSQKDLSALHLCQEFQAHEGCIWTIKFSLDGRFLASAGEDKVIHVWEVQECEVMSMKPEEGNLTPIHPSLMSSMERGVETQNLGKKKGKFGSKRGGSAAIPEYVHVPENVFTFSEKPYCSFHGHLDEVLDLSWSRSQLLLSSSMDKTVRLWDLDTKTCLKFFAHNDYVTCIQFNPMDDDYFISGSLDAKVRMWNIPARLVVDWTDIHEMVTAVSYTPDGQGVLVGTQKGSCRTYSIEDYKLSQTNTVELRNKKKSQLKKVTGFQFSPSNPSEVLVTSADSRIRIVDGIEVIHKFKGFRNANSQMAASFTPNGRFIISASEDSQVYVWKHEEHKHSSTGKSRAILITQSHEHFPCKDVSVAIPWPCMIKGDPPQIPISNGKKHSKRMLPPLPKKGNNNHVTESASNSPEHDHSSLSRSESGIGDSFSNSKRMLPPHPKKESEIEEDGEAISRTNSGIGDSFSSDPSSIRYGDSPSISAAANPSSDSWSSNYSSYDGNHGSSAIHPSAWGLVIVTAGFGGEIRCYQNFGLPRRMGRQVFGSPA 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01311 941 PANTHER WD REPEAT DOMAIN 44 20 929 IPR040324 -
Trre14g01311 941 MobiDBLite consensus disorder prediction 795 810 - -
Trre14g01311 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 595 IPR001680 GO:0005515
Trre14g01311 941 MobiDBLite consensus disorder prediction 852 895 - -
Trre14g01311 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 456 IPR001680 GO:0005515
Trre14g01311 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 595 - -
Trre14g01311 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Trre14g01311 941 SMART WD40_4 555 594 IPR001680 GO:0005515
Trre14g01311 941 SMART WD40_4 514 552 IPR001680 GO:0005515
Trre14g01311 941 SMART WD40_4 687 728 IPR001680 GO:0005515
Trre14g01311 941 SMART WD40_4 408 447 IPR001680 GO:0005515
Trre14g01311 941 SMART WD40_4 650 686 IPR001680 GO:0005515
Trre14g01311 941 SMART WD40_4 596 635 IPR001680 GO:0005515
Trre14g01311 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 707 737 IPR001680 GO:0005515
Trre14g01311 941 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Trre14g01311 941 MobiDBLite consensus disorder prediction 772 895 - -
Trre14g01311 941 Gene3D - 500 758 IPR015943 GO:0005515
Trre14g01311 941 PRINTS G protein beta WD-40 repeat signature 539 553 IPR020472 -
Trre14g01311 941 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Trre14g01311 941 PRINTS G protein beta WD-40 repeat signature 581 595 IPR020472 -
Trre14g01311 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 521 561 IPR001680 GO:0005515
Trre14g01311 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 521 555 - -
Trre14g01311 941 Pfam WD domain, G-beta repeat 413 446 IPR001680 GO:0005515
Trre14g01311 941 Pfam WD domain, G-beta repeat 705 728 IPR001680 GO:0005515
Trre14g01311 941 Pfam WD domain, G-beta repeat 518 552 IPR001680 GO:0005515
Trre14g01311 941 Pfam WD domain, G-beta repeat 558 594 IPR001680 GO:0005515
Trre14g01311 941 MobiDBLite consensus disorder prediction 832 848 - -
Trre14g01311 941 Gene3D - 361 477 IPR015943 GO:0005515
Trre14g01311 941 MobiDBLite consensus disorder prediction 128 177 - -
Trre14g01311 941 FunFam WD repeat-containing protein 44 502 769 - -
Trre14g01311 941 SUPERFAMILY WD40 repeat-like 409 734 IPR036322 GO:0005515
Trre14g01311 941 ProSitePatterns Trp-Asp (WD) repeats signature. 539 553 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01311 Trre-Chr14 11336474 11340576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01311 520 725 U-box Gene Family AT2G33340 26.168 7.62e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01311 K20241 - gmx:100782200 1228.39