Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01306 ATGGCAACAGCAACATACCCACCACCACCACCTTATTATAGACTTTACAAAGATTACTTGGAAGATCATGACTCTGCTCCAATGCCTCCACGGCCAATTGAAGGGAATTACATTTGTTTTGGTGGAAATTACACTACTAGTGATGTTCTACCAAGCTTGGAAGAACAAGGGGTACGTCAGCTATATTCTAAGGGGCCGAATGTTGATTTCAAGAAGGAACTGAGGTCACTTAATAGAGAATTGCAACTACACATTTTAGAGCTTGCTGATATTCTTATTGAGAGGCCATCCCAGTATGCAAGAAGAGTCGAAGAAATTTCGACTGTATTCAAAAACCTACATCATCTTTTAAATTCATTGCATCCTCATCAGGCGAGATCAACATTGATTCACATTATGGAACTTAGATAG 411 0.3942 MATATYPPPPPYYRLYKDYLEDHDSAPMPPRPIEGNYICFGGNYTTSDVLPSLEEQGVRQLYSKGPNVDFKKELRSLNRELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSLHPHQARSTLIHIMELR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01306 136 Coils Coil 67 87 - -
Trre14g01306 136 SUPERFAMILY Mediator hinge subcomplex-like 66 135 IPR037212 GO:0016592
Trre14g01306 136 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7 2 135 IPR009244 GO:0003712|GO:0006357|GO:0016592
Trre14g01306 136 Pfam MED7 protein 4 134 IPR009244 GO:0003712|GO:0006357|GO:0016592
Trre14g01306 136 Gene3D - 60 136 IPR044888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01306 Trre-Chr14 11313306 11316236 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED7 Trre14g01306 Med7 3.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01306 K15148 - gmx:100792250 233.802