Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01303 ATGGCGCAATCCAAAACTTTCATCGTTCTCCTTCGCAATCTCATTCACATTGCAACCGAAATTGCTCAAATCACCACCTTCAATCCCCTCATCAAAACTCAATGCTTTGATCTCAGCCGTAGGATCAATTTCCTTGTTCCTCTCTTTCATCACCTCATTAACGACGCCGTTTTTGTCCCTTGCGAAACTATTGTTTCGCTTCAACTTGCTTTTCTTTCTGCTAAGGATTTGCTTCTCTTTTGCTCTCAATCAAGCCATCTCTACATGATACTGGAGAAAGAGAAACTTAAGTTCAAATTCAATGATCTCGCTTCTCGTTTTGAACAAGCTATAATTGAGATTTGCTGTGACAAACTTGATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTTGTGACTGCTCAGTTTGGAAGGGCCAAAGAGCAATTTGATTCACCTTGTCTTGAGCTTTATGAGCATTTGTTGCCTATCTATAACCAGAGCTGTGATGTGAATACTGAACCTGCTGCATTACGTTTAATCTGTGAAAAACTACAATTTGTGAATGTGGAAGATATCAAACAAGAGTCAATTGCCATACATAAAATGATTGTTGATGGACGTGGGGTTCTTGAGAAAAGCGAGGGTTTTGAGAAAAACGCGCAGGGGTTGTCAATAGTGCTGAAAAAAATTGAAGATTTTTTGTCGAAGGAATCTGAAAATAATGGAGGTGGTTGTTTTGAGAAAGCCACGAAGGTGTTGTCGAGTGGGGATTCGCCTCCTCACACTGATGAGACATGCGTGAAATTATGTTGTCAGTCGCTAGTTGTGCCGGAGGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTGATCATTTCCACAGGGCAGACATACGAACGGGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCATCACTCAGCAGATTCTTTCCAGCCCCATCCTGACACCCAACCATGCTTTATACAGCCTGATATCAAATTGGTGTGAGGCAAATGCAGTGGAACCACCTAGAACTAGAAGATTAGGAAATTTCTGGATCTGTAAGGAAACCTCGGACGGCTCTTCTGAATTAATAAATCTTGATACTTTGATGAGGAAACTTACTTCCAGTTACATTGAGGATCAGCGTTATGCAGCAGGAGAGCTACCTATTCTTGCCAGAAACTCTGATCATAATCGAAATTTGATCGGTGAAGCTGGTGCTATACCCCTCCTTGTTGATCTCCTCTACACTCCTGATGCTGGCACCCAGGAGCATGCGGTTACTGCTCTTCTTAACCTATCGATCTGCGATGAAAACAAAGAGCGCATCATGGCTTCTGAGGCTGCGCCGGGAATCCTTCATGTTCTCAAAAGTGGTAGTATGCAAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCATCTCTAAAGCGGATGAGAGCAAAAAGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGCTCGATGCTGCCTCAGCACTATTCAATCTGTGTTTATACCATGGGAACAAAGGGCGTGCTATTAAGGCCGGTATTGTGCCCAAATTGGTAGAAATGTTAACAGAACCAGGTGAGATGAGGGATGAGGCATTGGCAATCACGGCTTTAATAGCTAGCCACCCGGATGCAATAGAAGCATTTAACTCAACGAATGCTATTCCCATTTTGGTGGAATTCATCAGTAATGGGTCTTCCAGGAACAAAGAAAATGCAACTTCGGTGCTTCTGTACCTATGTAGTGGAGATCCACATAACCTGGTGATTGTCGCTTCACTTGGAGTGGTCAATCCTCTTTCGGAACTGGCAAAGAATGGTTCAGAAAGGGGAAAGCGGAAAGCTGCACAGCTTCTCGAGTTGTTTGGAATTGGGAGACCATTGTGA 1944 0.4372 MAQSKTFIVLLRNLIHIATEIAQITTFNPLIKTQCFDLSRRINFLVPLFHHLINDAVFVPCETIVSLQLAFLSAKDLLLFCSQSSHLYMILEKEKLKFKFNDLASRFEQAIIEICCDKLDISEDLKEQVALVTAQFGRAKEQFDSPCLELYEHLLPIYNQSCDVNTEPAALRLICEKLQFVNVEDIKQESIAIHKMIVDGRGVLEKSEGFEKNAQGLSIVLKKIEDFLSKESENNGGGCFEKATKVLSSGDSPPHTDETCVKLCCQSLVVPEEFRCPISLELMKDPVIISTGQTYERACIKKWLDAGHRTCPITQQILSSPILTPNHALYSLISNWCEANAVEPPRTRRLGNFWICKETSDGSSELINLDTLMRKLTSSYIEDQRYAAGELPILARNSDHNRNLIGEAGAIPLLVDLLYTPDAGTQEHAVTALLNLSICDENKERIMASEAAPGILHVLKSGSMQARENAAATFFSISKADESKKAIGASGAIKALVTLFCEGSQRGKLDAASALFNLCLYHGNKGRAIKAGIVPKLVEMLTEPGEMRDEALAITALIASHPDAIEAFNSTNAIPILVEFISNGSSRNKENATSVLLYLCSGDPHNLVIVASLGVVNPLSELAKNGSERGKRKAAQLLELFGIGRPL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01303 647 Gene3D - 510 645 IPR011989 -
Trre14g01303 647 FunFam RING-type E3 ubiquitin transferase 269 343 - -
Trre14g01303 647 Gene3D - 7 116 IPR036537 GO:0007166
Trre14g01303 647 SUPERFAMILY RING/U-box 270 343 - -
Trre14g01303 647 CDD RING-Ubox_PUB 271 323 IPR045210 -
Trre14g01303 647 SMART arm_5 480 520 IPR000225 GO:0005515
Trre14g01303 647 SMART arm_5 521 559 IPR000225 GO:0005515
Trre14g01303 647 SMART arm_5 561 601 IPR000225 GO:0005515
Trre14g01303 647 SMART arm_5 397 438 IPR000225 GO:0005515
Trre14g01303 647 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Trre14g01303 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Trre14g01303 647 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Trre14g01303 647 Pfam Armadillo/beta-catenin-like repeat 481 519 IPR000225 GO:0005515
Trre14g01303 647 Gene3D - 355 508 IPR011989 -
Trre14g01303 647 PANTHER U BOX DOMAIN-CONTAINING 32 641 - -
Trre14g01303 647 SUPERFAMILY ARM repeat 368 641 IPR016024 -
Trre14g01303 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 343 IPR013083 -
Trre14g01303 647 FunFam RING-type E3 ubiquitin transferase 355 645 - -
Trre14g01303 647 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Trre14g01303 647 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01303 Trre-Chr14 11275185 11279566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01303 12 639 U-box Gene Family AT3G46510 47.806 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01303 - - vum:124836668 754.207