Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01302 ATGCCAATGGCGCAATCCAAAACTTTCATCGTTCTCCTTCGCAATCTCATTCACATTGCAACCGAAATTGCTCAAATCACCACCTTCAATCCCCTCATCAAAACTCAATGCTTTGATCTCAGCCGTAGGATCAATTTCCTTGTTCCTCTCTTTCATCACCTCATTAACGACGCCGTTTTTGTCCCTTGCGAAACTATTGTTTCGCTTCAACTTGCTTTTCTTTCTGCTAAGGATTTGCTTCTCTTTTGCTCTCAATCAAGCCATCTCTACATGATACTGGAGAAAGAGAAACTTAAGTTCAAATTCAATGATCTCGCTTCTCGTTTTGAACAAGCTATAATTGAGATTTGCTGTGACAAACTTGATATTTCTGAGGACCTCAAGGAGCAGGTTGCACTTGTGACTGCTCAGTTTGGAAGGGCCAAAGAGCAATTTGATTCACCTTGTCTTGAGCTTTATGAGCATTTGTTGCCTATCTATAACCAGAGCTGTGATGTGAATACTGAACCTGCTGCATTACGTTTAATCTGTGAAAAACTACAATTTGTGAATGTGGAAGATATCAAACAAGAGTCAATTGCCATACATAAAATGATTGTTGATGGACGTGGGGTTCTTGAGAAAAGCGAGGGTTTTGAGAAAAACGCGCAGGGGTTGTCAATAGTGCTGAAAAAAATTGAAGATTTTTTGTCGAAGGAATCTGAAAATAATGGAGGTGGTTGTTTTGAGAAAGCCACGAAGGTGTTGTCGAGTGGGGATTCGCCTCCTCACACTGATGAGACATGCGTGAAATTATGTTGTCAGTCGCTAGTTGTGCCGGAGGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTGATCATTTCCACAGGGCAGACATACGAACGGGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCATCACTCAGCAGATTCTTTCCAGCCCCATCCTGACACCCAACCATGCTTTATACAGCCTGATATCAAATTGGTGTGAGGCAAATGCAGTGGAACCACCTAGAACTAGAAGATTAGGAAATTTCTGGATCTGTAAGGAAACCTCGGACGGCTCTTCTGAATTAATAAATCTTGATACTTTGATGAGGAAACTTACTTCCAGTTACATTGAGGATCAGCGTTATGCAGCAGGAGAGCTACCTATTCTTGCCAGAAACTCTGATCATAATCGAAATTTGATCGGTGAAGCTGGTGCTATACCCCTCCTTGTTGATCTCCTCTACACTCCTGATGCTGGCACCCAGGAGCATGCGGTTACTGCTCTTCTTAACCTATCGATCTGCGATGAAAACAAAGAGCGCATCATGGCTTCTGAGGCTGCGCCGGGAATCCTTCATGTTCTCAAAAGTGGTAGTATGCAAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCATCTCTAAAGCGGATGAGAGCAAAAAGGCAATTGGTGCATCTGGAGCAATCAAGGCACTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAGCTCGATGCTGCCTCAGCACTATTCAATCTGTGTTTATACCATGGGAACAAAGGGCGTGCTATTAAGGCCGGTATTGTGCCCAAATTGGTAGAAATGTTAACAGAACCAGGTGAGATGAGGGATGAGGCATTGGCAATCACGGCTTTAATAGCTAGCCACCCGGATGCAATAGAAGCATTTAACTCAACGAATGCTATTCCCATTTTGGTGGAATTCATCAGTAATGGGTCTTCCAGGAACAAAGAAAATGCAACTTCGGTGCTTCTGTACCTATGTAGTGGAGATCCACATAACCTGGTGATTGTCGCTTCACTTGGAGTGGTCAATCCTCTTTCGGAACTGGCAAAGAATGGTTCAGAAAGGGGAAAGCGGAAAGCTGCACAGCTTCTCGAGTTGTTTGGAATTGGGAGACCATTGTGA 1950 0.4374 MPMAQSKTFIVLLRNLIHIATEIAQITTFNPLIKTQCFDLSRRINFLVPLFHHLINDAVFVPCETIVSLQLAFLSAKDLLLFCSQSSHLYMILEKEKLKFKFNDLASRFEQAIIEICCDKLDISEDLKEQVALVTAQFGRAKEQFDSPCLELYEHLLPIYNQSCDVNTEPAALRLICEKLQFVNVEDIKQESIAIHKMIVDGRGVLEKSEGFEKNAQGLSIVLKKIEDFLSKESENNGGGCFEKATKVLSSGDSPPHTDETCVKLCCQSLVVPEEFRCPISLELMKDPVIISTGQTYERACIKKWLDAGHRTCPITQQILSSPILTPNHALYSLISNWCEANAVEPPRTRRLGNFWICKETSDGSSELINLDTLMRKLTSSYIEDQRYAAGELPILARNSDHNRNLIGEAGAIPLLVDLLYTPDAGTQEHAVTALLNLSICDENKERIMASEAAPGILHVLKSGSMQARENAAATFFSISKADESKKAIGASGAIKALVTLFCEGSQRGKLDAASALFNLCLYHGNKGRAIKAGIVPKLVEMLTEPGEMRDEALAITALIASHPDAIEAFNSTNAIPILVEFISNGSSRNKENATSVLLYLCSGDPHNLVIVASLGVVNPLSELAKNGSERGKRKAAQLLELFGIGRPL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01302 649 SUPERFAMILY RING/U-box 272 345 - -
Trre14g01302 649 PANTHER U BOX DOMAIN-CONTAINING 34 643 - -
Trre14g01302 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515
Trre14g01302 649 Gene3D - 512 647 IPR011989 -
Trre14g01302 649 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Trre14g01302 649 Pfam Armadillo/beta-catenin-like repeat 400 439 IPR000225 GO:0005515
Trre14g01302 649 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515
Trre14g01302 649 SUPERFAMILY ARM repeat 370 643 IPR016024 -
Trre14g01302 649 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Trre14g01302 649 SMART arm_5 399 440 IPR000225 GO:0005515
Trre14g01302 649 SMART arm_5 563 603 IPR000225 GO:0005515
Trre14g01302 649 SMART arm_5 523 561 IPR000225 GO:0005515
Trre14g01302 649 SMART arm_5 482 522 IPR000225 GO:0005515
Trre14g01302 649 FunFam RING-type E3 ubiquitin transferase 357 647 - -
Trre14g01302 649 Gene3D - 357 510 IPR011989 -
Trre14g01302 649 Gene3D - 9 118 IPR036537 GO:0007166
Trre14g01302 649 Pfam U-box domain 272 342 IPR003613 GO:0004842|GO:0016567
Trre14g01302 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
Trre14g01302 649 FunFam RING-type E3 ubiquitin transferase 271 345 - -
Trre14g01302 649 CDD RING-Ubox_PUB 273 325 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01302 Trre-Chr14 11275185 11279572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01302 14 641 U-box Gene Family AT3G46510 47.806 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01302 - - vum:124836668 754.207