Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01301 ATGGTTTATACTTCTCTTCCACCATATATGGATCCAGCCAACTGGCATCAACAGCAACCAAATCATCAAGGGGCAAATACTATTGTTAATACTCCTCTTTTTACTACACCGTCACAACTTCCACCATCGAATCTGACACCATCACAACCTCATGGAGGCTCGATCAGGCCAGGTTCGATGGCAGATAGGGCTAGGATGGCCAACATACCTTTGCAAGAACCATCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTACAACAACTACAGCCTCTCACAGCCGCGCCACTTCTGCAAGACCTGTAGAAGGTATTGGACAAGGGGCGGCGCTCTAAGAAGCGTCCCGGTTGGAGGTGGTTGCCGAAGAAACAAGAGAACTAAATCGAGTAGCAACAACACCTCAAAGTCTCCAGTTAGCTCGGATCGTCAAACTAGTTCTGCAAACAACTCTCCCGCGGTACTCAGTTCCCCTACTCCACCACCGATGAGATTCATGGCACCTATGCATCAACTCGGCGATCACCTCGGTGAAATAGGGTTAAACTATGGTTTTTCTGGTCCAATGGGAGGAGTAGGAGACTTGAATTTTCATATTGGATGCTCTTTAGGTGGAGCTATTGGTAACGGCGGTGTTAGTGGTGGTGGCGGTGGTGGTTCTGCATCGATTTTACCTGTTAGTGGTTTCGAGCAATGGAGAATGCCACAACAAACTCAACAATTTCCATTCTTGTCAAGCTTAGAAGCTTCTTCTTCACATGGATTGTTATATCCATTTGAAGGTGGTGGTGGTGGTAATAATCAAGCACATATATATGGTGGTGTCCCTAAGGTATTATCAACTAATTCTAGTGTGAAAATGGAAGAAAATCAATCTAGACAATTCTTGGGAATGATCAATAATAATAACAACAACAATAACCCTAATAATGAACAATATTGGAGTACTTCTGGTGGTAATGGTGGTGCTACTTCAACTTGGACAGATCTTGCAGCTTTTAACTCTTCTTCAACAACTACCAATTCCAACTATAGAACATAA 1053 0.4349 MVYTSLPPYMDPANWHQQQPNHQGANTIVNTPLFTTPSQLPPSNLTPSQPHGGSIRPGSMADRARMANIPLQEPSQKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSSNNTSKSPVSSDRQTSSANNSPAVLSSPTPPPMRFMAPMHQLGDHLGEIGLNYGFSGPMGGVGDLNFHIGCSLGGAIGNGGVSGGGGGGSASILPVSGFEQWRMPQQTQQFPFLSSLEASSSHGLLYPFEGGGGGNNQAHIYGGVPKVLSTNSSVKMEENQSRQFLGMINNNNNNNNPNNEQYWSTSGGNGGATSTWTDLAAFNSSSTTTNSNYRT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01301 350 MobiDBLite consensus disorder prediction 120 171 - -
Trre14g01301 350 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Trre14g01301 350 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Trre14g01301 350 MobiDBLite consensus disorder prediction 128 158 - -
Trre14g01301 350 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Trre14g01301 350 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 281 IPR045174 GO:0003700|GO:0006355
Trre14g01301 350 MobiDBLite consensus disorder prediction 35 53 - -
Trre14g01301 350 MobiDBLite consensus disorder prediction 304 324 - -
Trre14g01301 350 MobiDBLite consensus disorder prediction 35 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01301 Trre-Chr14 11262684 11263897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01301 48 340 C2C2-Dof Transcription Factor Family AT3G55370 41.158 1.17e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre14g01301 zf-Dof 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01301 - - tpra:123888034 595.119