Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01298 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAATGAAACAGAACAAGCTGGTTTTGGAAATTTAGAAGTTTCTGAGAGAGAGTTATGGTTGAATAATACTACAAATAATCATCATCATCATCATGGTGATGATGATGATCTTTTAGGTATGAATATGAATGATGATGATGCATCTATGTTCTATGCTGATTTTCCACCTTTACTTGATTTTCCATGCATGTCATCATCATCTTCATCTTCATCATCTTCAACACCATTGAAAACTATTGCATGTACTTCAACTACAACTACTACTTCTTCTTCTTCCTCTGCTTCATCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGAAGAAGATCATGGTGAGAAAATAATGAGTACTCAAAATGGTTACATGCATCAACATCATCATCATCCATTAGATCATCATCATGGTCATGGTCATCATGGTCAACAACATGGTCAACATGCAACAACTTTATCATCAACTGCATCTATGGAGATATCTCAACAACAACAGGATCTTGGTGTTTGTGATAACAATCATGTTATTGGTGATGGTGGTGATTGCATGGATGATGATGTTATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGATTTTTTTGATCCTGCATCTATTTTTCAAAATGATGAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAATTCAAGTGCAAGATGAGTATCATCATCAACATCAACAAGTTCCAATGATAGTGCATGATGATAATGAAACAAAACTACAAGGACAAGAAAATAATGATGTTTTTGTTTGTGATGATGTTACAAACAATGAGGAAGAAAATAATATTCTTCAAGGAGTAGATAATGCATGTGATGATGATGGTGTTGTTAATGATGAAATGAGTAGTGTTTTTTTGGAATGGCTTAAATCTAACAAAGATAGTGTATCAGCAAATGATTTAAGGAATGTGAAGCTTAAGAAATCGACAATCGAAAGTGCTGCGAGACGATTAGGTGGTGGAAAAGAAGGAATGAAACAATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAACAAAAGACTCAAAGAAAACACCAACATTAACAACACAACATTATCCTCAAATCTTGTTCCTCAAACACAACCTTATCAAGATCCTTGTCAAAACCAAAACACAATTACAAACACTTTTGCACCAGTTGATCAATCAACCACTTGTTTTAACCAAACATCATGGTTAGATCAAACACAACCTCTCATTGTACCTCCACAGCAATTTTCACAACCAATGGTTGGAGTTGGAGTTGGATATGTTGGTGATCCTTATAACACAAATGGTTCTGTTTCAAATAACCTTAACCCGAACCCTTACCAACCTGCTGTTACTAATGATCAATATCATCATATGTTGGACTCAAATCAATCATGGGGTGCTTCACAATTCAATGTTGCATCAAACTACAATCAATCATTTGTGGAAAACAATAATAGCAATGTGATTCAACCTCATGGTGTGAGTTTTGGAGGATATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGTGATAGGTTAATGAAGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCAAGGCAAAGAAGGTTGCCTCATCATCGGCATCAGAATAATAATAATCAGCATCATCATCAGAATATTCAAGGTTCTGATTCACTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGCTGCTGGTTCTCATCCAAATCCAGCTAATTGGATGTATTGGCAAACTATGCCTGGTGGTGGGGCAGCAGCTTCCATGGCACCTGTTGTTCCGGCTGAGCCGACACAGCCTCTGGTGGATCGTGACCGCGCTACCATGCACACACAGAGTTCTCATCAGGGTCGAAATGCATCGGATAGGAGACAGGGTTGGAAGCCTGAGAAGAATTTGAGGTTTCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGAAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCAATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTTCAAGAAGGAGATTTCATAGTTATATACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCAAAAAAAGCAGGAAAATCACAGAAAAACCAGCATGGGAATAATTCAGCAAATACAGCTGGAAATGTTGTCATGGATAATAATGGAACACCATCTTCACCAAAGAGAAAAAAATGA 2454 0.3692 MECGLDLHAKMVNETEQAGFGNLEVSERELWLNNTTNNHHHHHGDDDDLLGMNMNDDDASMFYADFPPLLDFPCMSSSSSSSSSSTPLKTIACTSTTTTTSSSSSASSSSAASWAILKSDLEEDHGEKIMSTQNGYMHQHHHHPLDHHHGHGHHGQQHGQHATTLSSTASMEISQQQQDLGVCDNNHVIGDGGDCMDDDVIMDTFGYMELLEANDFFDPASIFQNDEENPLVDFTQEQQIQVQDEYHHQHQQVPMIVHDDNETKLQGQENNDVFVCDDVTNNEEENNILQGVDNACDDDGVVNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENTNINNTTLSSNLVPQTQPYQDPCQNQNTITNTFAPVDQSTTCFNQTSWLDQTQPLIVPPQQFSQPMVGVGVGYVGDPYNTNGSVSNNLNPNPYQPAVTNDQYHHMLDSNQSWGASQFNVASNYNQSFVENNNSNVIQPHGVSFGGYGNQYNSYQFFHGPGDRLMKLGPSATKEARKKRMARQRRLPHHRHQNNNNQHHHQNIQGSDSLARLGSGDSCTNVVAAGSHPNPANWMYWQTMPGGGAAASMAPVVPAEPTQPLVDRDRATMHTQSSHQGRNASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKNQHGNNSANTAGNVVMDNNGTPSSPKRKK 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01298 817 MobiDBLite consensus disorder prediction 544 585 - -
Trre14g01298 817 SUPERFAMILY DNA-binding pseudobarrel domain 668 765 IPR015300 -
Trre14g01298 817 MobiDBLite consensus disorder prediction 640 659 - -
Trre14g01298 817 MobiDBLite consensus disorder prediction 570 585 - -
Trre14g01298 817 ProSiteProfiles B3 DNA-binding domain profile. 669 771 IPR003340 GO:0003677
Trre14g01298 817 Pfam B3 DNA binding domain 670 766 IPR003340 GO:0003677
Trre14g01298 817 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 300 786 IPR044800 GO:0003700
Trre14g01298 817 MobiDBLite consensus disorder prediction 550 569 - -
Trre14g01298 817 FunFam B3 domain-containing transcription factor FUS3 665 780 - -
Trre14g01298 817 MobiDBLite consensus disorder prediction 771 817 - -
Trre14g01298 817 CDD BfiI_C_EcoRII_N_B3 667 768 - -
Trre14g01298 817 MobiDBLite consensus disorder prediction 138 170 - -
Trre14g01298 817 Gene3D - 665 784 IPR015300 -
Trre14g01298 817 MobiDBLite consensus disorder prediction 787 810 - -
Trre14g01298 817 SMART B3_2 669 769 IPR003340 GO:0003677
Trre14g01298 817 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01298 Trre-Chr14 11207911 11211759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01298 28 803 B3 DNA Binding Superfamily AT3G24650 44.888 5.32e-160 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g01298 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01298 K09287 - psat:127127675 921.383