Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01297 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAATGAAACAGAACAAGCTGGTTTTGGAAATTTAGAAGTTTCTGAGAGAGAGTTATGGTTGAATAATACTACAAATAATCATCATCATCATCATGGTGATGATGATGATCTTTTAGGTATGAATATGAATGATGATGATGCATCTATGTTCTATGCTGATTTTCCACCTTTACTTGATTTTCCATGCATGTCATCATCATCTTCATCTTCATCATCTTCAACACCATTGAAAACTATTGCATGTACTTCAACTACAACTACTACTTCTTCTTCTTCCTCTGCTTCATCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGAAGAAGATCATGATCATCATCATGGTCATGGTCATCATGGTCAACAACATGGTCAACATGCAACAACTTTATCATCAACTGCATCTATGGAGATATCTCAACAACAACAGGATCTTGGTGTTTGTGATAACAATCATGTTATTGGTGATGGTGGTGATTGCATGGATGATGATGTTATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGATTTTTTTGATCCTGCATCTATTTTTCAAAATGATGAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAATTCAAGTGCAAGATGAGTATCATCATCAACATCAACAAGTTCCAATGATAGTGCATGATGATAATGAAACAAAACTACAAGGACAAGAAAATAATGATGTTTTTGTTTGTGATGATGTTACAAACAATGAGGAAGAAAATAATATTCTTCAAGGAGTAGATAATGCATGTGATGATGATGGTGTTGTTAATGATGAAATGAGTAGTGTTTTTTTGGAATGGCTTAAATCTAACAAAGATAGTGTATCAGCAAATGATTTAAGGAATGTGAAGCTTAAGAAATCGACAATCGAAAGTGCTGCGAGACGATTAGGTGGTGGAAAAGAAGGAATGAAACAATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAACAAAAGACTCAAAGAAAACACCAACATTAACAACACAACATTATCCTCAAATCTTGTTCCTCAAACACAACCTTATCAAGATCCTTGTCAAAACCAAAACACAATTACAAACACTTTTGCACCAGTTGATCAATCAACCACTTGTTTTAACCAAACATCATGGTTAGATCAAACACAACCTCTCATTGTACCTCCACAGCAATTTTCACAACCAATGGTTGGAGTTGGAGTTGGATATGTTGGTGATCCTTATAACACAAATGGTTCTGTTTCAAATAACCTTAACCCGAACCCTTACCAACCTGCTGTTACTAATGATCAATATCATCATATGTTGGACTCAAATCAATCATGGGGTGCTTCACAATTCAATGTTGCATCAAACTACAATCAATCATTTGTGGAAAACAATAATAGCAATGTGATTCAACCTCATGGTGTGAGTTTTGGAGGATATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGTGATAGGTTAATGAAGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCAAGGCAAAGAAGGTTGCCTCATCATCGGCATCAGAATAATAATAATCAGCATCATCATCAGAATATTCAAGGTTCTGATTCACTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGCTGCTGGTTCTCATCCAAATCCAGCTAATTGGATGTATTGGCAAACTATGCCTGGTGGTGGGGCAGCAGCTTCCATGGCACCTGTTGTTCCGGCTGAGCCGACACAGCCTCTGGTGGATCGTGACCGCGCTACCATGCACACACAGAGTTCTCATCAGGGTCGAAATGCATCGGATAGGAGACAGGGTTGGAAGCCTGAGAAGAATTTGAGGTTTCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGAAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCAATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGCATCAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTTCAAGAAGGAGATTTCATAGTTATATACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCAAAAAAAGCAGGAAAATCACAGAAAAACCAGCATGGGAATAATTCAGCAAATACAGCTGGAAATGTTGTCATGGATAATAATGGAACACCATCTTCACCAAAGAGAAAAAAATGA 2400 0.3704 MECGLDLHAKMVNETEQAGFGNLEVSERELWLNNTTNNHHHHHGDDDDLLGMNMNDDDASMFYADFPPLLDFPCMSSSSSSSSSSTPLKTIACTSTTTTTSSSSSASSSSAASWAILKSDLEEDHDHHHGHGHHGQQHGQHATTLSSTASMEISQQQQDLGVCDNNHVIGDGGDCMDDDVIMDTFGYMELLEANDFFDPASIFQNDEENPLVDFTQEQQIQVQDEYHHQHQQVPMIVHDDNETKLQGQENNDVFVCDDVTNNEEENNILQGVDNACDDDGVVNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENTNINNTTLSSNLVPQTQPYQDPCQNQNTITNTFAPVDQSTTCFNQTSWLDQTQPLIVPPQQFSQPMVGVGVGYVGDPYNTNGSVSNNLNPNPYQPAVTNDQYHHMLDSNQSWGASQFNVASNYNQSFVENNNSNVIQPHGVSFGGYGNQYNSYQFFHGPGDRLMKLGPSATKEARKKRMARQRRLPHHRHQNNNNQHHHQNIQGSDSLARLGSGDSCTNVVAAGSHPNPANWMYWQTMPGGGAAASMAPVVPAEPTQPLVDRDRATMHTQSSHQGRNASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKNQHGNNSANTAGNVVMDNNGTPSSPKRKK 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01297 799 MobiDBLite consensus disorder prediction 753 799 - -
Trre14g01297 799 MobiDBLite consensus disorder prediction 524 565 - -
Trre14g01297 799 MobiDBLite consensus disorder prediction 620 639 - -
Trre14g01297 799 MobiDBLite consensus disorder prediction 550 565 - -
Trre14g01297 799 MobiDBLite consensus disorder prediction 769 792 - -
Trre14g01297 799 FunFam B3 domain-containing transcription factor FUS3 645 762 - -
Trre14g01297 799 CDD BfiI_C_EcoRII_N_B3 647 750 - -
Trre14g01297 799 MobiDBLite consensus disorder prediction 137 158 - -
Trre14g01297 799 MobiDBLite consensus disorder prediction 530 549 - -
Trre14g01297 799 SMART B3_2 649 751 IPR003340 GO:0003677
Trre14g01297 799 SUPERFAMILY DNA-binding pseudobarrel domain 648 747 IPR015300 -
Trre14g01297 799 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 280 768 IPR044800 GO:0003700
Trre14g01297 799 Gene3D - 645 766 IPR015300 -
Trre14g01297 799 ProSiteProfiles B3 DNA-binding domain profile. 649 753 IPR003340 GO:0003677
Trre14g01297 799 Pfam B3 DNA binding domain 650 748 IPR003340 GO:0003677
Trre14g01297 799 MobiDBLite consensus disorder prediction 124 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01297 Trre-Chr14 11207911 11211759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01297 28 785 B3 DNA Binding Superfamily AT3G24650 45.293 2.34e-159 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g01297 B3 2.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01297 K09287 - psat:127127675 916.376