Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01296 ATGGAGTGTGGTTTAGATCTGCATGCAAAGATGGTGAATGAAACAGAACAAGCTGGTTTTGGAAATTTAGAAGTTTCTGAGAGAGAGTTATGGTTGAATAATACTACAAATAATCATCATCATCATCATGGTGATGATGATGATCTTTTAGGTATGAATATGAATGATGATGATGCATCTATGTTCTATGCTGATTTTCCACCTTTACTTGATTTTCCATGCATGTCATCATCATCTTCATCTTCATCATCTTCAACACCATTGAAAACTATTGCATGTACTTCAACTACAACTACTACTTCTTCTTCTTCCTCTGCTTCATCTTCCTCTGCAGCTTCTTGGGCTATTTTGAAATCAGATCTTGAAGAAGATCATGATCATCATCATGGTCATGGTCATCATGGTCAACAACATGGTCAACATGCAACAACTTTATCATCAACTGCATCTATGGAGATATCTCAACAACAACAGGATCTTGGTGTTTGTGATAACAATCATGTTATTGGTGATGGTGGTGATTGCATGGATGATGATGTTATTATGGATACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGATTTTTTTGATCCTGCATCTATTTTTCAAAATGATGAAGAAAATCCTTTAGTTGATTTCACACAAGAACAACAAATTCAAGTGCAAGATGAGTATCATCATCAACATCAACAAGTTCCAATGATAGTGCATGATGATAATGAAACAAAACTACAAGGACAAGAAAATAATGATGTTTTTGTTTGTGATGATGTTACAAACAATGAGGAAGAAAATAATATTCTTCAAGGAGTAGATAATGCATGTGATGATGATGGTGTTGTTAATGATGAAATGAGTAGTGTTTTTTTGGAATGGCTTAAATCTAACAAAGATAGTGTATCAGCAAATGATTTAAGGAATGTGAAGCTTAAGAAATCGACAATCGAAAGTGCTGCGAGACGATTAGGTGGTGGAAAAGAAGGAATGAAACAATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTACAAAACAAAAGACTCAAAGAAAACACCAACATTAACAACACAACATTATCCTCAAATCTTGTTCCTCAAACACAACCTTATCAAGATCCTTGTCAAAACCAAAACACAATTACAAACACTTTTGCACCAGTTGATCAATCAACCACTTGTTTTAACCAAACATCATGGTTAGATCAAACACAACCTCTCATTGTACCTCCACAGCAATTTTCACAACCAATGGTTGGAGTTGGAGTTGGATATGTTGGTGATCCTTATAACACAAATGGTTCTGTTTCAAATAACCTTAACCCGAACCCTTACCAACCTGCTGTTACTAATGATCAATATCATCATATGTTGGACTCAAATCAATCATGGGGTGCTTCACAATTCAATGTTGCATCAAACTACAATCAATCATTTGTGGAAAACAATAATAGCAATGTGATTCAACCTCATGGTGTGAGTTTTGGAGGATATGGAAATCAATATAATTCTTATCAGTTTTTTCATGGACCTGGTGATAGGTTAATGAAGTTAGGTCCTTCTGCTACAAAAGAAGCTAGAAAGAAGAGAATGGCAAGGCAAAGAAGGTTGCCTCATCATCGGCATCAGAATAATAATAATCAGCATCATCATCAGAATATTCAAGGTTCTGATTCACTTGCAAGATTGGGAAGTGGTGATAGTTGCACCAATGTTGTTGCTGCTGGTTCTCATCCAAATCCAGCTAATTGGATGTATTGGCAAACTATGCCTGGTGGTGGGGCAGCAGCTTCCATGGCACCTGTTGTTCCGGCTGAGCCGACACAGCCTCTGGTGGATCGTGACCGCGCTACCATGCACACACAGAGTTCTCATCAGGGTCGAAATGCATCGGATAGGAGACAGGGTTGGAAGCCTGAGAAGAATTTGAGGTTTCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGAAGAATTGTTTTGCCAAAAAAAGAGGCAGAAACACATTTGCCAGAATTGGAGGCAAGAGATGGAATTTCAATTACAATGGAAGACATTGGAACTTCTCGAGTTTGGAATATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTTGAGAATACTGGTGACTTTGTGAAAGCTAATGGACTTCAAGAAGGAGATTTCATAGTTATATACTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTTAAAGTGAGACAACAACAAGGAGCAAAACCAGAGGCAAAAAAAGCAGGAAAATCACAGAAAAACCAGCATGGGAATAATTCAGCAAATACAGCTGGAAATGTTGTCATGGATAATAATGGAACACCATCTTCACCAAAGAGAAAAAAATGA 2394 0.3701 MECGLDLHAKMVNETEQAGFGNLEVSERELWLNNTTNNHHHHHGDDDDLLGMNMNDDDASMFYADFPPLLDFPCMSSSSSSSSSSTPLKTIACTSTTTTTSSSSSASSSSAASWAILKSDLEEDHDHHHGHGHHGQQHGQHATTLSSTASMEISQQQQDLGVCDNNHVIGDGGDCMDDDVIMDTFGYMELLEANDFFDPASIFQNDEENPLVDFTQEQQIQVQDEYHHQHQQVPMIVHDDNETKLQGQENNDVFVCDDVTNNEEENNILQGVDNACDDDGVVNDEMSSVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRLKENTNINNTTLSSNLVPQTQPYQDPCQNQNTITNTFAPVDQSTTCFNQTSWLDQTQPLIVPPQQFSQPMVGVGVGYVGDPYNTNGSVSNNLNPNPYQPAVTNDQYHHMLDSNQSWGASQFNVASNYNQSFVENNNSNVIQPHGVSFGGYGNQYNSYQFFHGPGDRLMKLGPSATKEARKKRMARQRRLPHHRHQNNNNQHHHQNIQGSDSLARLGSGDSCTNVVAAGSHPNPANWMYWQTMPGGGAAASMAPVVPAEPTQPLVDRDRATMHTQSSHQGRNASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSQKNQHGNNSANTAGNVVMDNNGTPSSPKRKK 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01296 797 Gene3D - 645 764 IPR015300 -
Trre14g01296 797 MobiDBLite consensus disorder prediction 524 565 - -
Trre14g01296 797 MobiDBLite consensus disorder prediction 620 639 - -
Trre14g01296 797 ProSiteProfiles B3 DNA-binding domain profile. 649 751 IPR003340 GO:0003677
Trre14g01296 797 MobiDBLite consensus disorder prediction 550 565 - -
Trre14g01296 797 SUPERFAMILY DNA-binding pseudobarrel domain 648 745 IPR015300 -
Trre14g01296 797 Pfam B3 DNA binding domain 650 746 IPR003340 GO:0003677
Trre14g01296 797 MobiDBLite consensus disorder prediction 137 158 - -
Trre14g01296 797 SMART B3_2 649 749 IPR003340 GO:0003677
Trre14g01296 797 MobiDBLite consensus disorder prediction 751 797 - -
Trre14g01296 797 MobiDBLite consensus disorder prediction 530 549 - -
Trre14g01296 797 FunFam B3 domain-containing transcription factor FUS3 645 760 - -
Trre14g01296 797 CDD BfiI_C_EcoRII_N_B3 647 748 - -
Trre14g01296 797 MobiDBLite consensus disorder prediction 767 790 - -
Trre14g01296 797 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 280 766 IPR044800 GO:0003700
Trre14g01296 797 MobiDBLite consensus disorder prediction 124 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01296 Trre-Chr14 11207911 11211759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01296 28 783 B3 DNA Binding Superfamily AT3G24650 45.408 2.24e-161 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g01296 B3 1.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01296 K09287 - psat:127127675 908.286