Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01293 ATGAACTCACTATCTCACTTCTTCAATCTCCTTCTCTTGACTCTCCTAATGCCACTTTCCTTTGCTTCCAATTCCTCCAATGAACTCACTACCTTACTTTCATGGACACATTCCCTCCACCCTTTTTCCAACTGGAACCCTCTTGACTCAAATCCATGCAAATGGTCATTCATAACATGTTCATCACAAAACTCTGTAACAGAAATAAACATCCAAAATGTCCAATTAGCCCTTCCTTTTCCTTCAAATATTTCTTCATTTTCCAATCTTCAAAAGCTAGTCATTTCTGGTACCAACCTCACTGGAACTATTCCTTTTGATATTGGTAACTGTCTTAATCTTATAACCATTGATCTTAGCTCAAATAGTCTTGTAGGTCAAATTCCTTCAACTATTGGTAACCTAAAAAATCTTCAAAACTTAGTTTTAAACTCTAACCAATTAACTGGTTCAATACCTATTCAACTTTGTGATTGTGTTAATCTCAAAAACCTTGACATTTTTGATAATGATCTTAGTGGAAATCTTCCTATTGAGTTAGGGAAACTTTCAAATCTTGAAGTTATAAGAGCTGGTGGAAACAAAGATATTGTAGGGAAGATTCCAGAAGAATTAGGTGAATGCAAGAATTTAACTGTTTTAGGCCTTGCAGATACTAAAATTTCAGGTTCAATACCTAATTCATTAGGTAAGCTTATGAAGCTTGAAAAGATTTTGCTTTGGCAAAATAGTTTTGTTGGTAGAATACCTGATGAAATTGGAAACTGTAGTAGTTTGAAGATTCTTGATTTGTCTTTGAATTATTTCTCCGGTGGAATACCGGAGAGTTTAGGGAAACTATCAAATCTTGAAGAGCTTATGTTGAGTAATAATAATGTTTCTGGTTCGATACCTGCTTCGGTTTCGAATTTGACAAATTTGATTCAGTTGCAGTTAGATACAAATGAGATATCAGGTTTGATTCCGGTCGAGATTGGAAAGTTGACAAAGCTAACGGTTTTTTTCGCGTGGCAGAACAAACTTGAAGGTCGAATTCCGTCCGAGTTAGGAGATTGTTTAAGCCTCGAGGCTTTGGATTTGTCTTATAACAAACTTAGTGATAGTTTACCTTCGGGTCTTTTTAAGCTTCAGAATTTAACTAAGCTTTTGTTAATTTCTAATGATATCTCAGGTTTCATTCCTCCTGAGATTGGTAACTGTAGTTCTCTTATTCGACTTCGGCTTTTAGATAACAAAATCAGTGGTGAGATACCAAGAGAAATAGGTTTTCTTAATAACCTTAGTTTCCTTGATTTGTCCGAAAATCGTCTTAGTGGTTCGGTGCCATTAGAGATTGGACAATGTAAAGAGCTTCAAATGTTGAATCTAAGTAATAACTCTCTTTCTGGTGATTTGCATGGTTTTTTGTCTTCTCTTACAATGCTAGAGGTTTTGGATGTTTCAATGAATAATTTCTCTGGTGAGGTTCCGATGAGTATTGGTGAATTAACTTCGCTTCTTCGAGTTATTTTAAGCAAAAACTCTTTCTCTGGATCAATTCCTTCAACTCTTGGGAAATGCTCAGGTATTCAACTTCTTGACCTTAGCAGTAACATGTTCTCGGGGAGCATACCGAAAGAATTGTTTCAAATTGAAGCACTTGATATTGCTTTGAATTTGAGTCACAATGCATTATCAGGAGTGATTCCAGTTGAGATTTCGGCTTTAAACAAGCTCTCGGTTCTAGACCTTTCACATAACATGTTTGAAGGTGATTTGACGGTGTTTTCAGGCCTCGAAAATCTTGTTTCTTTGAACATTTCATACAACAAATTCACTGGTTATTTACCAGACAACAAGTTGTTTCATCTACTAGCAACAACAGATTTGGTTGGAAATCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTCATTGAAAACGTTGCAATGACAAAGATGTTAAACCGTTCTAATTCTAAGAGGTCGGAGATGATTAAAGTGGCCATTGGTTTGCTAAGTTTCTTAAGTGTTGCAATGACAATCTTTGGAATTGTTACGGTCTTTCGAGCAAGGAGAATTGTTCGAGATGACAATGACTCCGAGATGGGAGGAGGTGATTCATGGCCTTGGCAGTTCACACCATTCCAAAAGGTCAACTTTTGTGTGGAGCAAATTCTAAAGTGTTTGGTGGAATCAAATGTAATTGGAAAAGGGTGTTCAGGGATAGTTTATCGCGCGGAAATGGAAAACGGTGATGTCATTGCCGTAAAACGGCTATGGCCAACAACAACAACAGCTAGAACCACCACAAGATATGATCATAGTCAAAATTTCGGACTCGCAAAACTTGTTGACGATGGAGATTTCGCGAGATCTTCAAGTACACTAGCCGGTTCTTATGGTTACATAGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGCGATGTATACAGCTATGGTATAGTTGTATTAGAAGTACTAACAGGTAAACAACCGATCGATCCAACAATACCAGATGGACTTCACATTGTTGATTGGGTTAGACAGAAAAGAGGAGGAGTTGAAGTACTAGATGTAAACTTAAGAGCAAGACCGGAATCCGAAATCGAAGAAATGTTGCAGACATTAGGTGTTGCATTGTTATGTGTAACCTCAAGCCCTGATGATAGACCAACAATGAAAGATGTTGTTGCAATGATGAAAGAGATTAAACAAGAAAGAGATGAATGTGTGAAGGTTTTTGATGGAACTTCTAGAAATGAAAGTAATCATTACAATGAAAAAGAATCAGTGGAAATGATGATGAATGATTCATGTCCTACAACAAGTAGCAGCAGCATAAATGTGCATTTACATTACTCTCCTCATAGCTCTACAACACTAAATTAA 2880 0.3667 MNSLSHFFNLLLLTLLMPLSFASNSSNELTTLLSWTHSLHPFSNWNPLDSNPCKWSFITCSSQNSVTEINIQNVQLALPFPSNISSFSNLQKLVISGTNLTGTIPFDIGNCLNLITIDLSSNSLVGQIPSTIGNLKNLQNLVLNSNQLTGSIPIQLCDCVNLKNLDIFDNDLSGNLPIELGKLSNLEVIRAGGNKDIVGKIPEELGECKNLTVLGLADTKISGSIPNSLGKLMKLEKILLWQNSFVGRIPDEIGNCSSLKILDLSLNYFSGGIPESLGKLSNLEELMLSNNNVSGSIPASVSNLTNLIQLQLDTNEISGLIPVEIGKLTKLTVFFAWQNKLEGRIPSELGDCLSLEALDLSYNKLSDSLPSGLFKLQNLTKLLLISNDISGFIPPEIGNCSSLIRLRLLDNKISGEIPREIGFLNNLSFLDLSENRLSGSVPLEIGQCKELQMLNLSNNSLSGDLHGFLSSLTMLEVLDVSMNNFSGEVPMSIGELTSLLRVILSKNSFSGSIPSTLGKCSGIQLLDLSSNMFSGSIPKELFQIEALDIALNLSHNALSGVIPVEISALNKLSVLDLSHNMFEGDLTVFSGLENLVSLNISYNKFTGYLPDNKLFHLLATTDLVGNQGLCPNGHDSCFIENVAMTKMLNRSNSKRSEMIKVAIGLLSFLSVAMTIFGIVTVFRARRIVRDDNDSEMGGGDSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTTTARTTTRYDHSQNFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDVNLRARPESEIEEMLQTLGVALLCVTSSPDDRPTMKDVVAMMKEIKQERDECVKVFDGTSRNESNHYNEKESVEMMMNDSCPTTSSSSINVHLHYSPHSSTTLN 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01293 959 Pfam Protein tyrosine and serine/threonine kinase 771 895 IPR001245 GO:0004672|GO:0006468
Trre14g01293 959 SUPERFAMILY Protein kinase-like (PK-like) 771 917 IPR011009 -
Trre14g01293 959 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 283 892 - -
Trre14g01293 959 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 354 641 - -
Trre14g01293 959 ProSiteProfiles Protein kinase domain profile. 485 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01293 959 PRINTS Leucine-rich repeat signature 355 368 - -
Trre14g01293 959 PRINTS Leucine-rich repeat signature 424 437 - -
Trre14g01293 959 Gene3D Transferase(Phosphotransferase) domain 1 771 922 - -
Trre14g01293 959 SMART serkin_6 723 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g01293 959 ProSitePatterns Protein kinases ATP-binding region signature. 729 751 IPR017441 GO:0005524
Trre14g01293 959 Gene3D Ribonuclease Inhibitor 374 641 IPR032675 -
Trre14g01293 959 SUPERFAMILY RNI-like 198 544 - -
Trre14g01293 959 Gene3D Phosphorylase Kinase; domain 1 710 770 - -
Trre14g01293 959 Gene3D Ribonuclease Inhibitor 273 373 IPR032675 -
Trre14g01293 959 SMART LRR_sd22_2 352 381 - -
Trre14g01293 959 SMART LRR_sd22_2 569 594 - -
Trre14g01293 959 SMART LRR_sd22_2 135 156 - -
Trre14g01293 959 SMART LRR_sd22_2 424 445 - -
Trre14g01293 959 SMART LRR_sd22_2 280 306 - -
Trre14g01293 959 SMART LRR_typ_2 592 617 IPR003591 -
Trre14g01293 959 SMART LRR_typ_2 569 591 IPR003591 -
Trre14g01293 959 SMART LRR_typ_2 424 448 IPR003591 -
Trre14g01293 959 SMART LRR_typ_2 496 520 IPR003591 -
Trre14g01293 959 SMART LRR_typ_2 280 304 IPR003591 -
Trre14g01293 959 SMART LRR_typ_2 352 376 IPR003591 -
Trre14g01293 959 SMART LRR_typ_2 135 159 IPR003591 -
Trre14g01293 959 SUPERFAMILY L domain-like 37 271 - -
Trre14g01293 959 Gene3D Ribonuclease Inhibitor 176 272 IPR032675 -
Trre14g01293 959 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Trre14g01293 959 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 228 336 - -
Trre14g01293 959 SUPERFAMILY L domain-like 551 631 - -
Trre14g01293 959 SUPERFAMILY Protein kinase-like (PK-like) 701 754 IPR011009 -
Trre14g01293 959 FunFam Nuclear pore complex protein NUP107 25 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01293 Trre-Chr14 11199305 11202832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01293 764 954 Receptor kinase-like Gene Family AT5G56040 45.411 2.78e-41 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre14g01293 PK_Tyr_Ser-Thr 5.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01293 - - gmx:100815339 996.882