Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01289 ATGTCTGGTCAGAGAAGAGATTCAAAATTCAAAGAGAAACAGATTAATGATCTTGTGTCAAGGTTACAACTACTATTGCCTCAGCTCAACCAAATAAACAACTCAAGGCAATCAACATCCAAGATCTTGCAGGAAACATTAAATCACATTAGGAGGCTGCAGAAAGAGGTAGAAGATCTAAGTGAAAGGCTAACACAGTTGATGGATTCTGTGGATATCAATGATAGTGACAGAAGAATTTTAGAGAACTTTTTGCAACATTAA 264 0.3598 MSGQRRDSKFKEKQINDLVSRLQLLLPQLNQINNSRQSTSKILQETLNHIRRLQKEVEDLSERLTQLMDSVDINDSDRRILENFLQH 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01289 87 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 53 IPR011598 GO:0046983
Trre14g01289 87 Pfam Helix-loop-helix DNA-binding domain 13 54 IPR011598 GO:0046983
Trre14g01289 87 Gene3D - 4 82 IPR036638 GO:0046983
Trre14g01289 87 PANTHER DNA BINDING PROTEIN 1 86 IPR044172 -
Trre14g01289 87 Coils Coil 43 70 - -
Trre14g01289 87 SMART finulus 9 59 IPR011598 GO:0046983
Trre14g01289 87 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 70 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01289 Trre-Chr14 11139376 11148094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01289 9 85 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 43.590 1.23e-15 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g01289 HLH 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01289 - - tpra:123888045 135.576