Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01287 ATGGTAGTCATAGAGCACGAGAAACCCGACGATCGAAACCCGAATCAATCCAACTCAACTGCCGCCGGCACCGACGCCTTCGACGGCTTTGAAACCGCCAGTGAAGCTGATCTCGATAGCGACGTCGACGAAAGTGAAACTAGGAGCCGAGAAGAAGAACAGCAACATCGTCAACAATCGCAGCAGCAGCGGAAGGAGACAGAGGTAGAGCATGTACAAGATGTTGATCAGAGAAGTATTTCCTCTGAGGATGCTTTGATCAATGAAGAGGAATTGAGACAGAAAGCATTGGGTGAAGCAAATGAAGCAAAAGTAGAAGGTAATAAACTTTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGAACATGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATTCAAACCGTGCTGTGTGCTTTTTGAAACTGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAGCCATTCGCCAACTGGAGCCCCTTGCTGCTGTCAAACGGGAAAAAATGAAAGAAGAAATGATTGCAAAATTGAAAGAAATGGGCAATTCTGTCTTGGGACGCTTTGGGATGAGCGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGCTCCTATTCTATTTCAATGGAACGCTAA 819 0.4249 MVVIEHEKPDDRNPNQSNSTAAGTDAFDGFETASEADLDSDVDESETRSREEEQQHRQQSQQQRKETEVEHVQDVDQRSISSEDALINEEELRQKALGEANEAKVEGNKLFVDGKYEEALSQYEHALQVAPDMPSSVEIRSICHSNRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRQLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01287 272 ProSiteProfiles TPR repeat profile. 141 174 IPR019734 GO:0005515
Trre14g01287 272 Gene3D Tetratricopeptide repeat domain 60 240 IPR011990 GO:0005515
Trre14g01287 272 SUPERFAMILY TPR-like 98 216 IPR011990 GO:0005515
Trre14g01287 272 Coils Coil 42 70 - -
Trre14g01287 272 Pfam Tetratricopeptide repeat 176 208 IPR013105 -
Trre14g01287 272 Pfam Tetratricopeptide repeat 143 173 IPR001440 GO:0005515
Trre14g01287 272 ProSiteProfiles TPR repeat profile. 100 133 IPR019734 GO:0005515
Trre14g01287 272 MobiDBLite consensus disorder prediction 43 83 - -
Trre14g01287 272 SMART tpr_5 175 208 IPR019734 GO:0005515
Trre14g01287 272 SMART tpr_5 100 133 IPR019734 GO:0005515
Trre14g01287 272 SMART tpr_5 141 174 IPR019734 GO:0005515
Trre14g01287 272 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
Trre14g01287 272 MobiDBLite consensus disorder prediction 1 83 - -
Trre14g01287 272 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 12 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01287 Trre-Chr14 11075560 11079587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01287 100 242 Calmodulin-binding Proteins AT3G25230 38.411 3.73e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01287 K24926 - gmx:100808386 372.474