Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01286 ATGGTAAAACGGTACCGTTTAAAATTCGCTGGTCGAATCAGCACGAGTCAGTTCTGGATTACTTCGGAAGAAGCTCGAAGCCCAACCACAACAAAACGTAGGAAACAAAAATTTCTTCTGCAAACACCAGAGAAGAAGATGGTAGTCATAGAGCACGAGAAACCCGACGATCGAAACCCGAATCAATCCAACTCAACTGCCGCCGGCACCGACGCCTTCGACGGCTTTGAAACCGCCAGTGAAGCTGATCTCGATAGCGACGTCGACGAAAGTGAAACTAGGAGCCGAGAAGAAGAACAGCAACATCGTCAACAATCGCAGCAGCAGCGGAAGGAGACAGAGGTAGAGCATGTACAAGATGTTGATCAGAGAAGTATTTCCTCTGAGGATGCTTTGATCAATGAAGAGGAATTGAGACAGAAAGCATTGGGTGAAGCAAATGAAGCAAAAGTAGAAGGTAATAAACTTTTTGTAGATGGGAAGTATGAGGAGGCATTATCTCAATATGAACATGCTTTACAAGTTGCACCAGACATGCCTTCATCTGTGGAAATACGCTCAATATGCCATTCAAACCGTGCTGTGTGCTTTTTGAAACTGGGAAAATATGAAAATACAATTAAAGAATGCACAAAAGCATTGGAACTGAATCCTGCATATGTTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAGGCAATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAGCCATTCGCCAACTGGAGCCCCTTGCTGCTGTCAAACGGGAAAAAATGAAAGAAGAAATGATTGCAAAATTGAAAGAAATGGGCAATTCTGTCTTGGGACGCTTTGGGATGAGCGTTGACAACTTCAAAGCAGTCAAAGATCCAAACACTGGCTCCTATTCTATTTCAATGGAACGCTAA 957 0.4253 MVKRYRLKFAGRISTSQFWITSEEARSPTTTKRRKQKFLLQTPEKKMVVIEHEKPDDRNPNQSNSTAAGTDAFDGFETASEADLDSDVDESETRSREEEQQHRQQSQQQRKETEVEHVQDVDQRSISSEDALINEEELRQKALGEANEAKVEGNKLFVDGKYEEALSQYEHALQVAPDMPSSVEIRSICHSNRAVCFLKLGKYENTIKECTKALELNPAYVKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKAIRQLEPLAAVKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISMER 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01286 318 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Trre14g01286 318 MobiDBLite consensus disorder prediction 21 133 - -
Trre14g01286 318 MobiDBLite consensus disorder prediction 27 59 - -
Trre14g01286 318 SMART tpr_5 221 254 IPR019734 GO:0005515
Trre14g01286 318 SMART tpr_5 146 179 IPR019734 GO:0005515
Trre14g01286 318 SMART tpr_5 187 220 IPR019734 GO:0005515
Trre14g01286 318 SUPERFAMILY TPR-like 144 262 IPR011990 GO:0005515
Trre14g01286 318 Pfam Tetratricopeptide repeat 222 254 IPR013105 -
Trre14g01286 318 Gene3D Tetratricopeptide repeat domain 106 286 IPR011990 GO:0005515
Trre14g01286 318 Pfam Tetratricopeptide repeat 189 219 IPR001440 GO:0005515
Trre14g01286 318 Coils Coil 88 116 - -
Trre14g01286 318 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 58 317 - -
Trre14g01286 318 ProSiteProfiles TPR repeat profile. 146 179 IPR019734 GO:0005515
Trre14g01286 318 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Trre14g01286 318 MobiDBLite consensus disorder prediction 89 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01286 Trre-Chr14 11075560 11079725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01286 146 277 Calmodulin-binding Proteins AT3G25230 39.286 8.50e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01286 K24926 - gmx:100808386 372.474