Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01277 ATGGAAGAAGTTATGATGGATGTAGATGAACAACAGATTATACCTGACCCTCTACCATTTGCTAGAAGCTATCAACTTGAAGCACTGGAGCAAGCAGTTCGTGAAAATACAATAGTGTACCTGGAGACCGGATCTGGAAAGACGTTGATAGCTACCATGCTTCTCCGAAGCTACGCTTGTCACCTCCGGAAGCCTTCTCCGTACATTGCTGTTTTTATAGTTCCGAAAGTTGTGTTGATTTCTCAGCAAGCTAAAGCCTTGAGAAACCACACGGATTTAAACATTGGAATGTATTGCGGAAACATGGGTCGTGACAATTGGGACCGAGATATGTGGAAGGACGAGATGGAGAAACATGAGGTGCTTGTCATGACTCCTGGAATATTGCTTTCTTGCTTGAGGCATAGCTTTATCAAAATGAATATGATAAAGGTTTTAATAATGGATGAATGCCATCATGTTACGGGTGATCACCCATATGCTTGTATCATGAATGAATTTTATCATCAGGAATTAAGATCTGGTACCGCTGAGCTTCCTCGAATTTTTGGGATGACCGCATCCCTAGTTAAGTCGAAAGCTGCGAATTCTGAGTCGACCTTGTCAGAAAAACTTCGGAAACTAGTGACTCTAATGAATTCAAAGGTTTATACACGCGAAAGTGATGCTGTCATCTCAGAGCCGTTTAACCTAAAATTCCGGTATTATAAGGACAATGTAATTTCCAATGCGTTACGCGAAGAATTATCCAAAAAACTCAGCGCATTAAAACAACAGTACGAGCTTTCTGTGACAAGTTCAGATTTGACAGCTGATTCTGTCAAATCTATAAACAAAAAAATGTCGAAGATTTTCGAATCCTCAATATCTTGCTTGGAACAGCTTGGTGCTTGGTTGGCTTTGAAGGCTATGGAAACCTTATCTTCCTATGAAACCTTCACACGGGGTAACTCGGGGTATCACATTGTGAAAAAATTTATTTCGGCGACTACCTTGACACTGCAGACTTACATACCATCTGATCCTCAGTGGAGTATTGGCGAAAATATGAATTCCGACATGGAAATGGGACTATTGACTTCCAAAGTGTCCTGTCTTATTGATTGTCTACTCGAGTACAATGGTGTTACCGAAATGAGATGCATAGTTTTTGTGGAAAGGGTTATTGTAGCTAGGGTCCTTGAAATTCTATTGAACACTTTGCTTCCAAAATACAATAGTTGGAAGGTTAGGTATATTACAGGAAAGCATAATGAATGGAAAACACAATCTCCGAAAATTCAAGATGAAATTGTGGAAGAATTTCGCAAGGGATTGGTAAATGTCATTGTTGCGACAGCGGTTCTTGAAGAGGGTTTAGATGTTCAAAGTTGCAATTTGGTTATTAGATTTGACCTACCTCGAAACGTGTGCAGTTTTGTACAATCCCGAGGCCGTGCTAGAATGCAAAATTCAGATTACATATTGATGTTACAGAGCGGCGATTTAGCTGCACATTCTCGAATAGAAAAATACATTTCCAGTGAGGAAATGATGAGGAAGGAGTCTTTGCATTATTCTTCCATTCCATGTGAGAGTCTTGAAAATGATCTATTTGATGAGAAAGCTTATCGTGTTGCTAGCACCGGAGCTGTTGTTAATCTTAATTCGAGCATTCCTTTGATACAGTTATATTGTGCACGGCTCCCTGCAGATGGGTATTTTAAACCATATCCGAGGTGGGATAAACAAGAAGGAATATTGTATCTTCCTAAGAGTGGTCCTCTAGAGGCTATTCATGTACAAGGTGACCCGAAGTACTTAAAGAATATTGCATGCCTTGAAGCATGCAAACAACTTCATAAGATTGGAGCATTGACGGATAATCTTGTTCCTTCTATTTTCGTTGAAGAAGCAGAGGTAGAGGGATTTGGGAATGAACCGTATGATGAAGAACAACCAAGTTATGTACCACCTGAATTGGTCAATCGTGTGTCAAACAATAGCAACACAAACTACTATTGTTATTTGATAGAGCTAAAACAAGATTTTAGCTATGATATCACAGTGCAAGACATTTTCCTTGCAACAAGAGTCAATCTTGACCCCGAAATCGGATGCACGGAATTCGATATGCTTTTCGACAGAGGTAGCTTGTTTGTAAACTTGAAATACAAAGGAACTATCAACCTCTCACCAGATCAGGTTCTTTTGTGTAAAAAGTTCCAAGTTAATGTTCTTGGAATTCTTATGAATTCTAAAATGTATAAGAAATCTGATCTAGGCATATCTTGTTCGGAAAATGATCTTCAAATCGATTATCTCCTACTTCCATCTATTGCAAAAGATGATACACTAGTTCTTGATTGGTCAACAATTTGTTCTATTCATCCAAATATCTTCATGTGTTTGCACAATGAAGCGAAAATACGAACCACAGAGAGTTTGGTTTGCGAATGCAAATTGCAGAATGCTTTGATTTATACTCCACATAATGGCCATACTTACATCACCACTAATATATTGGATTTGGATGGAAACTCACCTCTAGAACTAGGGGATGGTTATGTTACTACATACAAGAACTACTATGCAAAAAGGTATGGCATTCGTTTGAATTTTGAACATCAACGCCTACTTAGAGCAAGACATGTTTTTCCTGTAAAAAATTATACTCATGGATGCAAACAAGTGAAAGATAGAGATGTGAGCAACAACTTTGTGTCATTACCTCCCGAACTATGCGTTATAATCATGTCTCCAATTTCTGTTAGCACAATTTATTCTTTTTCGTTTATTCCATCAATCATGCATCGAATTGAGTCGTTGCTTGCGGCTTTCAACTTCGTAAAGACGCATTTTGTTCATTGTCCTCAAAATAGAATACAAACATTCAAGGTCTTAGAAGCAATGACTGCAAAGTCATGCTACGAGACCTTCGGTTATGAGACTCTCGAAACACTCGGTGATTCATTTTTGAAATATGCTGTTAGTAAACAACTGTTTCATATGTATGAAAATCAGCATGAGGGTCTTCTTAGTGTGAAGAGGGAGAAAATCATTTCTAATGCTTCTCTCTGTAAGTTAGGTTGCGATTCTGGACTTCCGGGCTTCATTCGGACTGAGTCGTTTGATACTAAGACATGGATCATTCCGGGAGCTAAATCAAGGGGTTTTAAATTAGAAGAGATTTCTTACGACGGAGCAAAGGTTTATACCCGAGGAACTAGAAAAATGAAAAGAAAAGTTGTTGCTGATGTGGTTGAAGCACTAATCGGTGCCTTCCTCAGCGCTGGTGGCGAGATGGCTGCGTTGTTATTTATGGATTGGGTTGGAATCAAAGTTAATTTTCACATTTCGCCGTATGAGACGAAATGCAGTGTCAATCCTGAGAATGTTCTTAATGTCGCTTTCTTAGAATCCATATTGAAGTACTCTTTTGTGGACCGTTCTCTATTAGTAGAAGCTATGACTCATGGTTCATACATGCTGCGCGATGTTCCAAGATGCTATCAGCGATTGGAATATTTAGGGGACGCGGTGTTGGATTATCTGATCACAATGCATTTGTACAAAGAATACCCAGGCATGTCACCCGGGATGTTAACAGACATGAGGGCAGCCTCGGTGAACAATGACTGTTATGCGAGGTCTTCCATAAGGGTCCAACTGCATAAACATGTACTCCATACCTCTCAGGAGTTACATAAGCATATTACAGCGGCACTTGCTAAATACAACGAACTATCTTCATCATCAACTTTTGGATGGGAGTCCGACGCATCATTCCCCAAGGTACTTGGCGACATCATAGAATCTCTAGCTGGTGCTATACTTGTAGATTCAGGATACAACAAGGGGGTTGTGTGGGAAAGCATAAGACCTCTTTTGGAACCACTTGTGACACCTGAGACATTAAAGATCCATCCCATTAGAGAATTAACCGAATTGTGCCAAATTAGGAATTATAAAATGGAGAAAACATTTTCCCGCAACGATGGCATTACTACTTGTAGAATCAATATAATAACTGTGGATGGTGTAACTCATCAATATGAGTATAAAGGTTCTACTGATAAAAAAACTGCCACAAGACTAGCCTGCAAGACAGCTTTGAATTCCTTGAAGTTGAAGGAAACACAAGACATGTTACTATGTTAG 4140 0.3925 MEEVMMDVDEQQIIPDPLPFARSYQLEALEQAVRENTIVYLETGSGKTLIATMLLRSYACHLRKPSPYIAVFIVPKVVLISQQAKALRNHTDLNIGMYCGNMGRDNWDRDMWKDEMEKHEVLVMTPGILLSCLRHSFIKMNMIKVLIMDECHHVTGDHPYACIMNEFYHQELRSGTAELPRIFGMTASLVKSKAANSESTLSEKLRKLVTLMNSKVYTRESDAVISEPFNLKFRYYKDNVISNALREELSKKLSALKQQYELSVTSSDLTADSVKSINKKMSKIFESSISCLEQLGAWLALKAMETLSSYETFTRGNSGYHIVKKFISATTLTLQTYIPSDPQWSIGENMNSDMEMGLLTSKVSCLIDCLLEYNGVTEMRCIVFVERVIVARVLEILLNTLLPKYNSWKVRYITGKHNEWKTQSPKIQDEIVEEFRKGLVNVIVATAVLEEGLDVQSCNLVIRFDLPRNVCSFVQSRGRARMQNSDYILMLQSGDLAAHSRIEKYISSEEMMRKESLHYSSIPCESLENDLFDEKAYRVASTGAVVNLNSSIPLIQLYCARLPADGYFKPYPRWDKQEGILYLPKSGPLEAIHVQGDPKYLKNIACLEACKQLHKIGALTDNLVPSIFVEEAEVEGFGNEPYDEEQPSYVPPELVNRVSNNSNTNYYCYLIELKQDFSYDITVQDIFLATRVNLDPEIGCTEFDMLFDRGSLFVNLKYKGTINLSPDQVLLCKKFQVNVLGILMNSKMYKKSDLGISCSENDLQIDYLLLPSIAKDDTLVLDWSTICSIHPNIFMCLHNEAKIRTTESLVCECKLQNALIYTPHNGHTYITTNILDLDGNSPLELGDGYVTTYKNYYAKRYGIRLNFEHQRLLRARHVFPVKNYTHGCKQVKDRDVSNNFVSLPPELCVIIMSPISVSTIYSFSFIPSIMHRIESLLAAFNFVKTHFVHCPQNRIQTFKVLEAMTAKSCYETFGYETLETLGDSFLKYAVSKQLFHMYENQHEGLLSVKREKIISNASLCKLGCDSGLPGFIRTESFDTKTWIIPGAKSRGFKLEEISYDGAKVYTRGTRKMKRKVVADVVEALIGAFLSAGGEMAALLFMDWVGIKVNFHISPYETKCSVNPENVLNVAFLESILKYSFVDRSLLVEAMTHGSYMLRDVPRCYQRLEYLGDAVLDYLITMHLYKEYPGMSPGMLTDMRAASVNNDCYARSSIRVQLHKHVLHTSQELHKHITAALAKYNELSSSSTFGWESDASFPKVLGDIIESLAGAILVDSGYNKGVVWESIRPLLEPLVTPETLKIHPIRELTELCQIRNYKMEKTFSRNDGITTCRINIITVDGVTHQYEYKGSTDKKTATRLACKTALNSLKLKETQDMLLC 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01277 1379 SMART ultradead3 17 234 IPR014001 -
Trre14g01277 1379 ProSiteProfiles Ribonuclease III family domain profile. 962 1093 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 ProSiteProfiles PAZ domain profile. 814 912 IPR003100 GO:0005515
Trre14g01277 1379 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 528 IPR001650 -
Trre14g01277 1379 FunFam Endoribonuclease dicer-like 1 546 634 - -
Trre14g01277 1379 Gene3D - 21 290 IPR027417 -
Trre14g01277 1379 PANTHER DICER-RELATED 35 1373 - -
Trre14g01277 1379 Gene3D Ribonuclease III domain 953 1103 IPR036389 GO:0004525|GO:0006396
Trre14g01277 1379 Gene3D paz domain 792 914 - -
Trre14g01277 1379 SUPERFAMILY RNase III domain-like 960 1108 IPR036389 GO:0004525|GO:0006396
Trre14g01277 1379 SMART riboneu5 1144 1299 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 SMART riboneu5 958 1113 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 SUPERFAMILY dsRNA-binding domain-like 1258 1371 - -
Trre14g01277 1379 Pfam DEAD/DEAH box helicase 23 189 IPR011545 GO:0003676|GO:0005524
Trre14g01277 1379 ProSiteProfiles Ribonuclease III family domain profile. 1129 1276 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 Gene3D Ribonuclease III domain 1126 1302 IPR036389 GO:0004525|GO:0006396
Trre14g01277 1379 SUPERFAMILY RNase III domain-like 1129 1296 IPR036389 GO:0004525|GO:0006396
Trre14g01277 1379 SMART PAZ_2_a_3 794 938 IPR003100 GO:0005515
Trre14g01277 1379 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 28 207 IPR014001 -
Trre14g01277 1379 Pfam Helicase conserved C-terminal domain 362 481 IPR001650 -
Trre14g01277 1379 CDD RIBOc 961 1112 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 FunFam Endoribonuclease dicer-like 1 353 517 - -
Trre14g01277 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 502 IPR027417 -
Trre14g01277 1379 Pfam Dicer dimerisation domain 551 625 - -
Trre14g01277 1379 FunFam Endoribonuclease dicer-like protein 18 255 - -
Trre14g01277 1379 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 551 633 IPR005034 GO:0016891
Trre14g01277 1379 CDD RIBOc 1144 1299 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 SUPERFAMILY PAZ domain 803 910 IPR036085 GO:0005515
Trre14g01277 1379 SMART helicmild6 392 483 IPR001650 -
Trre14g01277 1379 Pfam Ribonuclease III domain 1165 1276 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 Pfam Ribonuclease III domain 976 1091 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 CDD DEXHc_dicer 21 218 - -
Trre14g01277 1379 Gene3D - 355 518 IPR027417 -
Trre14g01277 1379 Pfam PAZ domain 808 934 IPR003100 GO:0005515
Trre14g01277 1379 FunFam Endoribonuclease dicer-like 1 1123 1297 - -
Trre14g01277 1379 ProSitePatterns Ribonuclease III family signature. 1165 1173 IPR000999 GO:0004525|GO:0006396
Trre14g01277 1379 Gene3D Dicer dimerisation domain 546 633 IPR038248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01277 Trre-Chr14 10998127 11005671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01277 426 509 Eukaryotic Initiation Factors Gene Family AT3G19760 34.884 2.20e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01277 K11592 - gmx:100792448 1785.39