Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01228 ATGTCTCTTTCAAAAAACAACACTCAGATGAAGGAAGGTGGAGCAACAACAGCAGCACCTTCATCCTCCTCATCTTCATGGAGTAGGCTCCCTCCTATGCCTCCACACAGATTTGAAGATAGCGATGAAGATCTATTCGAAGTTCCAGATGTGGAAGGTACACAAAGTCAAAGTGTCCATTCAGAAGGAACAAATCAAAATAGTAATCATAATCAAAACAACGCAACAGATCCTCAACTTCAACCTGGCTTTCCTGGAAAGCGCCGCCGTGGAAGAAACCCCGCAGATAAAGAATATAGACGACTCAAAAGGTTGCTAAGGAACAGGGTCTCTGCCCAACAAGCTCGTGAAAGGAAAAAAGTTTATGTGAATGACTTAGAATCAAGAGCTAAAGAGATGGAAGATAAGAACTCCAATTTAGAAGAGCGCATCTCAACTTTGATCAATGAAAACACCATGCTCCGAAAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAACCTTAG 516 0.4205 MSLSKNNTQMKEGGATTAAPSSSSSSWSRLPPMPPHRFEDSDEDLFEVPDVEGTQSQSVHSEGTNQNSNHNQNNATDPQLQPGFPGKRRRGRNPADKEYRRLKRLLRNRVSAQQARERKKVYVNDLESRAKEMEDKNSNLEERISTLINENTMLRKVLMNTRPKVDESNEP 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01228 171 SMART brlzneu 96 160 IPR004827 GO:0003700|GO:0006355
Trre14g01228 171 MobiDBLite consensus disorder prediction 1 116 - -
Trre14g01228 171 CDD bZIP_HY5-like 110 151 - -
Trre14g01228 171 Pfam bZIP transcription factor 97 156 IPR004827 GO:0003700|GO:0006355
Trre14g01228 171 SUPERFAMILY Leucine zipper domain 99 159 IPR046347 GO:0003700|GO:0006355
Trre14g01228 171 MobiDBLite consensus disorder prediction 51 80 - -
Trre14g01228 171 Gene3D Single helix bin 119 160 - -
Trre14g01228 171 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 98 161 IPR004827 GO:0003700|GO:0006355
Trre14g01228 171 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 7 168 IPR044280 GO:0000981|GO:0045944
Trre14g01228 171 FunFam Transcription factor HY5 119 160 - -
Trre14g01228 171 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 103 118 IPR004827 GO:0003700|GO:0006355
Trre14g01228 171 Coils Coil 116 157 - -
Trre14g01228 171 MobiDBLite consensus disorder prediction 1 30 - -
Trre14g01228 171 MobiDBLite consensus disorder prediction 89 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01228 Trre-Chr14 10561871 10564438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01228 73 167 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 72.917 1.31e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre14g01228 bZIP_1 1.3e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01228 K16241 - gmx:100783826 224.172