Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01225 ATGGCAGAAGCTTCGACGAGAAAGACGAAAAGAAAGAACCGAACCCTAAAAACTCAGGACCTTGAACTCGACCGTTTCGACTCACTTCCATGGAATTCTTCTATTCCTCAACCCACTGAAAACGATGACAACTCGTTTTCACTTTTCACTGGTTCCAATGAACTCGAAGGAGGTTTTCTTTCACTGGAGGAGATTGATGAAGCCGAGTATGGTTTAGATATTCCCGATCCTGAAAATCATGACAGAAAGCACAATTCTAAACAGGACAAGAAGTTGGATAATCAGAAGCAGGATGGTGCTTGTAGTGATGGAGAAACAACAAAGGATGAGAGCATCAAGTCTAAAGTGAAGAAAAAGAAAAAGAAGAAAAACAAGGATGCAAAAGAAAACCAGAAAGCTCAACATTCAAATACTGGTGCGGCGGCTGATGTGAAGGACAGTGCTGGGGAAGAAAACATTGATGAAAATGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCTCTTAATGAAAGCAATACACAAACTGGGATTCAAGGAACCAACACCGATACAGAAAGCTTGTATTCCGGCCGCTGCTCATCAAGGGAAGGATGTTATTGGTGCTGCAGAGACGGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTTCAACGTCTTTTGGAGGAGCGCGACAAGGCTGCAAATATGGATTCGGAACAGGGTGAAGAAGCCGAAAAAAATGCTCCTACGGGCCTTTTGAGGAGTCTTATTATTGCTCCGACCAGAGAACTTGCACTTCAGGTCAAAGATCATCTGGAAAAAGTAGCCAAGCATATTAATGTTAGGGTGACCGCTATAGTTGGTGGTATTTTACCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGTCTGAGATTGTGGTCGCTACTCCAGGGAGGTTATGGGAACTTATGTCATCCGGAGAAAAACACCTGATTGAGTTACATTCACTGTCTTTTTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCTATAATTGACATGCTTCCCATGTCAAATATCTCTGGTGAAGATAATTCTCAAGGTGCACAAAATTGTGTTACAGTTTCTAGCTTGCAAAGAAAGAAAAGGCAAACTCTTGTTTTCTCAGCAACTGTCGCACTGTCCGCTGATTTTCGCAAGAAGTTAAAGCGTGGTTCAATGCAGAAAAAGCAACCATCAACAGATAGTTTGGATTCTATTGAAACTCTTTCTGAGCGAGCAGGAATGAGACCCAATGCTGCAGTTATTGATCTTACCAATCCATCAATATTAGCAGCTAAGATTGAAGAGTCCTTTATTGAATGCACAGAAGATAATAAAGATGCCCATTTGTATTATATTCTTACGGTCCATGGTCAAGGCCGCACAATAGTTTTTTGTACGTCAATTGCAGCTTTACGCCATATTTCTTCTATATTGCGCATTCTTGGCATCAATGTTTGGACTCTTCATGCTCAAATGCAACAGCGAGCGCGTTTAAAGGCCATGGACCGCTTTCGCGAAAATGACAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGCGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGCGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAGGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCGAAGGATAGCTTTCAGCGGTTTCCTCTGGAGAACTCATACATGCCAGAGGTTCTAAAACGATTGTCTCTTGCACGTCAAATAGACAAGATAACTAGGAAGGATTCACAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTCGCTGAAAATTATGACAGTGAAGAGGAACAAGTTAATAAATGTAGGCAAAAGAAAGCCAGCTCTAAGCAATTGAAGAAACTGCAGACGGAGCTCAGTATGCTGATTTCACGTCCTTTGCAATCAAAAACATTTTCACATCGATATTTAGCTGGGGCTGGTGTAACACCCCTCTTGCAGGAACAATTGCAACAATTAGCAAGGCAGAAACCAAGTGATCGCCAGAGTGCAGTATTCGGCAAAAAGGGAAAATTGGTTGTGATCGGTCAAGATTGTGTAGACGCACTTCATGCACTTCGGAGTGCTGGGGAAGAGGTGCGCATGGATATCAAGGATTCAACACGACAGAGAAATACTGTGAATTCGAAAAGAAAAAGAAAAGAGGAGAAAACACGTTTACGTGATCAGCGTAAAAAGCAGAAGAAAAAGCAAAACCAGGAGGACGAATAA 2382 0.4186 MAEASTRKTKRKNRTLKTQDLELDRFDSLPWNSSIPQPTENDDNSFSLFTGSNELEGGFLSLEEIDEAEYGLDIPDPENHDRKHNSKQDKKLDNQKQDGACSDGETTKDESIKSKVKKKKKKKNKDAKENQKAQHSNTGAAADVKDSAGEENIDENEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPIFQRLLEERDKAANMDSEQGEEAEKNAPTGLLRSLIIAPTRELALQVKDHLEKVAKHINVRVTAIVGGILPEKQERLLKARSEIVVATPGRLWELMSSGEKHLIELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISGEDNSQGAQNCVTVSSLQRKKRQTLVFSATVALSADFRKKLKRGSMQKKQPSTDSLDSIETLSERAGMRPNAAVIDLTNPSILAAKIEESFIECTEDNKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGINVWTLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDSFQRFPLENSYMPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVAENYDSEEEQVNKCRQKKASSKQLKKLQTELSMLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLARQKPSDRQSAVFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTRQRNTVNSKRKRKEEKTRLRDQRKKQKKKQNQEDE 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01225 793 MobiDBLite consensus disorder prediction 30 54 - -
Trre14g01225 793 Gene3D - 111 407 IPR027417 -
Trre14g01225 793 PANTHER RNA HELICASE 118 765 - -
Trre14g01225 793 CDD DEADc_DDX24 170 435 - -
Trre14g01225 793 Gene3D - 442 685 IPR027417 -
Trre14g01225 793 MobiDBLite consensus disorder prediction 73 113 - -
Trre14g01225 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 408 IPR014001 -
Trre14g01225 793 Pfam DEAD/DEAH box helicase 183 391 IPR011545 GO:0003676|GO:0005524
Trre14g01225 793 SMART ultradead3 178 421 IPR014001 -
Trre14g01225 793 MobiDBLite consensus disorder prediction 1 24 - -
Trre14g01225 793 MobiDBLite consensus disorder prediction 1 149 - -
Trre14g01225 793 Coils Coil 642 662 - -
Trre14g01225 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 613 IPR001650 -
Trre14g01225 793 Pfam Helicase conserved C-terminal domain 458 565 IPR001650 -
Trre14g01225 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 582 IPR027417 -
Trre14g01225 793 SMART helicmild6 485 566 IPR001650 -
Trre14g01225 793 Coils Coil 754 793 - -
Trre14g01225 793 CDD SF2_C_DEAD 446 575 - -
Trre14g01225 793 MobiDBLite consensus disorder prediction 752 793 - -
Trre14g01225 793 Coils Coil 118 138 - -
Trre14g01225 793 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 330 338 IPR000629 -
Trre14g01225 793 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01225 Trre-Chr14 10532005 10541956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01225 149 591 Eukaryotic Initiation Factors Gene Family AT1G72730 25.721 2.23e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01225 K14805 - gmx:100806018 1161.75