Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01212 ATGGAGACGCATGAGATGCATCGACTTAGAAGGTACGATGCTCTTCTTTCGATCAATTCTCCAAAGCATCATGGGGAGTTTAAAGTTAAGGTTATGAAAAAATGGGGTACGAAGGACCTGGTGAGAATGGGGAAAATCGTTTCTGTTGATATGATTTTGGCTGATCAAACCGGTCATAAAATACAAGCGACTATTCCTGAGAAGTTGTGTTCCAGGTTTGACAAGAAGGTTGTGGAGGGTAAAATTTACATAATGTCAAATTTTACCATTAAGGCAAACTTGGGTAATCATTTGGCCAGTTTTCATAGAAATTTATTGGTCTTCAATGATCAAACTAATGTTAAAATTTCTTGGGGGTGTGGCTTTCCATCTCATGGACTTGATTTAATTGGATCTAAAGATGTTCTGAGTCTTAAGGATAAGTTTCAATATTTGATTGATGTCATTGGTGTTATTACATATATCAGGCAAGATAAAAATATTTATCTCGATGGAACTACTACTAACACTGTTACTTTGAAGCTCACTGATAACAAGAAATGTAGTTGTACTTTTGAATGTGAGTTGTTTGGAGATTATGTTGAAATATTTCGTGAGCTGATGAAGGATACTGGGTTGGGACTTCCTGTTGTAGCTTTGCAATGGGTTAAAGTGACTAAAAGTCAAGGAAGAAGTGTTGTGCAAAGTGTTGATGGGATTACAAAGATTTATGTTAATCCCACATTTTATGACGCCTGCCAGTTTAGGGATGGGTTGGTGCTTGAACTTAATCGAAAGCAAAAGACGCTTGGATTTCCTCGTCGTGAGAAACCTATTGGTTTCAATTTCGCCACTCATTTCCATTGCAAGAGTATATCTCAGCTTAGGGAAGATCCCACTCTTGGAATCTATCTTATTAATGGTCGTATAGTTGAAATTTCTGCCCTTGACACTTGGTGGTATCCAGTTTGTGGCTGTGATTTAATTATTGAGGACTACCTTGGTGCTTTTTTCTGTGGGAAATGCTATGCTACTGATTTTGAACCAACTCTAAAGTATAGAGTTAAAATGGTGGTTGAAGATGAGTCTGGTGTAACGTTTTTGGAGGCATTTGATCATGTTATGCTTCCAATTGCTGTCGTCGACCCAACTAGACAGGGTATGACTAGGAGTTATTTCCCTTGTGCATTTGATCATGTTATTGGAAAGAGTATAATGTTTATCGTTGAGAAAAAGAAACATGATCTGGTATATTGTGATGGAATGTTTGAGTTGCTTTGTGTGTCAGATGATAGGGAGATTATTCAATATTATGTTGACAAGGGGATGTGTTCTACTCCTTCTAAGGATGTTCCTCCAAATTTGAATAAAGAGAGGAGTTTGTTGAATCAAGTTGCTTATAATCCTCCTCAAACTACAATTACCAAACTGCTCATTAACTATCTCAACCCTATTTCAACTACTTCTCCATATTTTCATGTTGGAGAGAGCTCCAATGCTGCTGCCACCCTTTTTGATGATGATAATTCAAATGTCAGATCAGTTCGTCCTCGCCTTGCTTGA 1542 0.3755 METHEMHRLRRYDALLSINSPKHHGEFKVKVMKKWGTKDLVRMGKIVSVDMILADQTGHKIQATIPEKLCSRFDKKVVEGKIYIMSNFTIKANLGNHLASFHRNLLVFNDQTNVKISWGCGFPSHGLDLIGSKDVLSLKDKFQYLIDVIGVITYIRQDKNIYLDGTTTNTVTLKLTDNKKCSCTFECELFGDYVEIFRELMKDTGLGLPVVALQWVKVTKSQGRSVVQSVDGITKIYVNPTFYDACQFRDGLVLELNRKQKTLGFPRREKPIGFNFATHFHCKSISQLREDPTLGIYLINGRIVEISALDTWWYPVCGCDLIIEDYLGAFFCGKCYATDFEPTLKYRVKMVVEDESGVTFLEAFDHVMLPIAVVDPTRQGMTRSYFPCAFDHVIGKSIMFIVEKKKHDLVYCDGMFELLCVSDDREIIQYYVDKGMCSTPSKDVPPNLNKERSLLNQVAYNPPQTTITKLLINYLNPISTTSPYFHVGESSNAAATLFDDDNSNVRSVRPRLA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01212 513 Gene3D - 277 416 IPR012340 -
Trre14g01212 513 SUPERFAMILY Nucleic acid-binding proteins 283 404 IPR012340 -
Trre14g01212 513 Pfam Domain of unknown function DUF223 51 116 IPR003871 -
Trre14g01212 513 CDD RPA1_DBD_A_like 28 114 - -
Trre14g01212 513 Gene3D - 12 116 IPR012340 -
Trre14g01212 513 Gene3D - 121 257 IPR012340 -
Trre14g01212 513 SUPERFAMILY Nucleic acid-binding proteins 27 117 IPR012340 -
Trre14g01212 513 CDD RPA1_DBD_B_like 147 242 - -
Trre14g01212 513 SUPERFAMILY Nucleic acid-binding proteins 143 250 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01212 Trre-Chr14 10397744 10400110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01212 6 365 Core DNA Replication Machinery Family AT5G08020 23.196 5.29e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01212 - - tpra:123922259 459.144