Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g01110 ATGTCTGAAATAATTTCCATTGGAAATGCCGAGGACAAAAAAGTGAAGCACAAAATGGAGGAGAATTTAGAGCCGGGATTTGAGAAGGTTCCAATAGCAACACCTCCATCCTCTCAATCTGATGTTGAGGATATAGTTACTCCAAAGCTTAACATTTGCACCAAATCCACTTCCAAACCATTGGAGATTGGTGAACATTCAAGTTCATCTCAGAATGCTACAGGTGAATCTTCATCTCAAAATATTATAGGTGAACCCTTACATAAGAACGCCAATGATGAACTTTTACTTGAGCAAGAAGTGAGGGATCAATTCTCTTGTCATTACTGTGACAAGAAATTCTGCTCTCCTCAAGCACTTGGAGGACACCAAAACGCTCATAAGAGTGAACGTGATTTCAAAAAACTTGAAGCACAGAGGAGAGTGGATGAATTAGATTCAATCATAGCATCTAGATCTTATAATCAAACATACCCTTATTCATTTTCAAGCCCTCACTATCAAAGGTATTCTTATTTCCGTAATGCTAATTTTTCACACCCAATTAGCACCCACATGAACAATACTATGCCTTCTTGGGGTAGTGTTTCTCTTTCTAGTGGCTATGATGGGTTGTATATGCCAAATACAACCCCCACATCACCCCGATTTGTGATGCAAATGCCAAATTCATCCTTAGCAACATCACAATTTGGTATGACTAATTTTTGGGGTGGAAATCAAAATGCTTCATTGCCAATTTCACAAAGGTCAAACACTCTCGGTTTGGGACTTTTTCCTCAAGCAAATCAAACCCCTTCAATTGTGGAGAGTGCAAATGTGAATGCTCAAGTTGGTTCTCAAACTCTTCAATTGTTACCTTGTGATCCTATTAGAGAAGGATCAATTCAAGCAAATTCCAATACATCTTTATCATCAACTCAATCAACCTCAGAGGAAGGGGAGTGGTTATGGTGCATAAGCTTTTTCCTTATGCACCGTGCATAA 987 0.388 MSEIISIGNAEDKKVKHKMEENLEPGFEKVPIATPPSSQSDVEDIVTPKLNICTKSTSKPLEIGEHSSSSQNATGESSSQNIIGEPLHKNANDELLLEQEVRDQFSCHYCDKKFCSPQALGGHQNAHKSERDFKKLEAQRRVDELDSIIASRSYNQTYPYSFSSPHYQRYSYFRNANFSHPISTHMNNTMPSWGSVSLSSGYDGLYMPNTTPTSPRFVMQMPNSSLATSQFGMTNFWGGNQNASLPISQRSNTLGLGLFPQANQTPSIVESANVNAQVGSQTLQLLPCDPIREGSIQANSNTSLSSTQSTSEEGEWLWCISFFLMHRA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g01110 328 Gene3D Classic Zinc Finger 91 158 - -
Trre14g01110 328 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Trre14g01110 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Trre14g01110 328 MobiDBLite consensus disorder prediction 57 86 - -
Trre14g01110 328 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 38 250 IPR044246 GO:0009788
Trre14g01110 328 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g01110 Trre-Chr14 9417411 9418397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g01110 105 161 C2H2 Transcription Factor Family AT5G57520 50.847 4.81e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g01110 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g01110 - - tpra:123892015 409.068